Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ASL17_RS06725 Genome accession   NZ_CP013957
Coordinates   1334161..1334934 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain V521 isolate Sequencing     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329161..1339934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASL17_RS06705 (ASL17_06710) trmFO 1329505..1330812 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ASL17_RS06710 (ASL17_06715) xerC 1331229..1332125 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  ASL17_RS06715 (ASL17_06720) hslV 1332122..1332667 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ASL17_RS06720 (ASL17_06725) hslU 1332733..1334136 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ASL17_RS06725 (ASL17_06730) codY 1334161..1334934 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ASL17_RS06730 (ASL17_06735) - 1334985..1335077 (+) 93 WP_001790530.1 hypothetical protein -
  ASL17_RS06735 (ASL17_06740) rpsB 1335276..1336043 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ASL17_RS06740 (ASL17_06745) - 1336077..1336190 (+) 114 WP_001789890.1 hypothetical protein -
  ASL17_RS06745 (ASL17_06750) tsf 1336225..1337106 (+) 882 WP_000201387.1 translation elongation factor Ts -
  ASL17_RS06750 (ASL17_06755) pyrH 1337243..1337965 (+) 723 WP_000057330.1 UMP kinase -
  ASL17_RS06755 (ASL17_06760) frr 1337984..1338538 (+) 555 WP_001280006.1 ribosome recycling factor -
  ASL17_RS06760 (ASL17_06765) - 1338911..1339681 (+) 771 WP_063655708.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=143564 ASL17_RS06725 WP_000055337.1 1334161..1334934(+) (codY) [Staphylococcus aureus strain V521 isolate Sequencing]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=143564 ASL17_RS06725 WP_000055337.1 1334161..1334934(+) (codY) [Staphylococcus aureus strain V521 isolate Sequencing]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428