Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   TP37_RS05430 Genome accession   NZ_CP011160
Coordinates   1224590..1226044 (-) Length   484 a.a.
NCBI ID   WP_042806014.1    Uniprot ID   -
Organism   Xanthomonas citri pv. aurantifolii strain FDC 1559     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1219590..1231044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TP37_RS05405 (TP37_05300) pilC 1219808..1221064 (-) 1257 WP_007973903.1 type II secretion system F family protein Machinery gene
  TP37_RS05410 (TP37_05305) pilE 1221391..1221831 (+) 441 WP_005934296.1 pilin Machinery gene
  TP37_RS05415 (TP37_05310) - 1221940..1222341 (+) 402 WP_046121195.1 pilin -
  TP37_RS05420 (TP37_05315) pilB 1222404..1224140 (+) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TP37_RS05425 - 1224237..1224383 (+) 147 WP_082336538.1 serine/threonine protein kinase -
  TP37_RS05430 (TP37_05320) pilR 1224590..1226044 (-) 1455 WP_042806014.1 sigma-54 dependent transcriptional regulator Regulator
  TP37_RS05435 (TP37_05330) - 1226313..1227926 (-) 1614 WP_007965357.1 HAMP domain-containing sensor histidine kinase -
  TP37_RS05440 (TP37_05335) sucC 1228158..1229327 (+) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  TP37_RS05445 (TP37_05340) sucD 1229352..1230227 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  TP37_RS24795 (TP37_05345) - 1230386..1230642 (+) 257 Protein_1031 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52493.28 Da        Isoelectric Point: 6.9090

>NTDB_id=143036 TP37_RS05430 WP_042806014.1 1224590..1226044(-) (pilR) [Xanthomonas citri pv. aurantifolii strain FDC 1559]
MGHHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKIARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=143036 TP37_RS05430 WP_042806014.1 1224590..1226044(-) (pilR) [Xanthomonas citri pv. aurantifolii strain FDC 1559]
TTGGGCCACCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGATCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGTGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTACGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCACGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCACTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.353

95.868

0.473

Multiple sequence alignment