Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   VT48_RS06995 Genome accession   NZ_CP011150
Coordinates   1376797..1377258 (-) Length   153 a.a.
NCBI ID   WP_007498684.1    Uniprot ID   A0A9X0FXQ0
Organism   Bacillus altitudinis strain W3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1371797..1382258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS06975 (VT48_06975) - 1372200..1373084 (+) 885 WP_017359428.1 cation diffusion facilitator family transporter -
  VT48_RS19760 - 1373149..1373301 (-) 153 WP_017367142.1 hypothetical protein -
  VT48_RS06980 (VT48_06980) - 1373602..1374141 (+) 540 WP_046343414.1 RDD family protein -
  VT48_RS06985 (VT48_06985) - 1374266..1375576 (+) 1311 WP_046343416.1 MFS transporter -
  VT48_RS06990 (VT48_06990) - 1375650..1376558 (+) 909 WP_008348035.1 chemotaxis protein -
  VT48_RS06995 (VT48_06995) kre 1376797..1377258 (-) 462 WP_007498684.1 YkyB family protein Regulator
  VT48_RS07000 (VT48_07000) - 1377478..1378374 (-) 897 WP_046343418.1 helix-turn-helix domain-containing protein -
  VT48_RS07005 (VT48_07005) - 1378488..1379420 (+) 933 WP_046343420.1 DMT family transporter -
  VT48_RS07010 (VT48_07010) - 1379590..1379805 (-) 216 WP_008348016.1 hypothetical protein -
  VT48_RS19765 - 1379970..1380146 (+) 177 WP_164071367.1 hypothetical protein -
  VT48_RS07015 (VT48_07015) - 1380371..1381648 (-) 1278 WP_046343422.1 MFS transporter -
  VT48_RS07020 (VT48_07020) - 1381722..1382219 (-) 498 WP_019743906.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17739.31 Da        Isoelectric Point: 10.2617

>NTDB_id=142828 VT48_RS06995 WP_007498684.1 1376797..1377258(-) (kre) [Bacillus altitudinis strain W3]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPRYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=142828 VT48_RS06995 WP_007498684.1 1376797..1377258(-) (kre) [Bacillus altitudinis strain W3]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAGATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment