Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AVM03_RS02650 Genome accession   NZ_CP013727
Coordinates   554148..554510 (+) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 549148..559510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS02620 (AVM03_02615) flgD 550051..550491 (+) 441 WP_003154247.1 flagellar hook assembly protein FlgD -
  AVM03_RS02625 (AVM03_02620) flgG 550516..551292 (+) 777 WP_003154244.1 flagellar basal body rod protein FlgG -
  AVM03_RS02630 (AVM03_02625) - 551332..551547 (+) 216 WP_003154243.1 flagellar FlbD family protein -
  AVM03_RS02635 (AVM03_02630) fliL 551544..551963 (+) 420 WP_014305005.1 flagellar basal body-associated protein FliL -
  AVM03_RS02640 (AVM03_02635) fliM 551997..552995 (+) 999 WP_003154240.1 flagellar motor switch protein FliM -
  AVM03_RS02645 (AVM03_02640) fliY 552985..554121 (+) 1137 WP_048367249.1 flagellar motor switch phosphatase FliY -
  AVM03_RS02650 (AVM03_02645) pilH 554148..554510 (+) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  AVM03_RS02655 (AVM03_02650) fliZ 554525..555178 (+) 654 WP_003154237.1 flagella biosynthesis regulatory protein FliZ -
  AVM03_RS02660 (AVM03_02655) fliP 555171..555836 (+) 666 WP_003154235.1 flagellar type III secretion system pore protein FliP -
  AVM03_RS02665 (AVM03_02660) fliQ 555851..556120 (+) 270 WP_003154234.1 flagellar biosynthesis protein FliQ -
  AVM03_RS02670 (AVM03_02665) fliR 556127..556906 (+) 780 WP_003154233.1 flagellar biosynthetic protein FliR -
  AVM03_RS02675 (AVM03_02670) flhB 556906..557985 (+) 1080 WP_058906017.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=142135 AVM03_RS02650 WP_003154238.1 554148..554510(+) (pilH) [Bacillus amyloliquefaciens strain MBE1283]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=142135 AVM03_RS02650 WP_003154238.1 554148..554510(+) (pilH) [Bacillus amyloliquefaciens strain MBE1283]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCAGACGGAGCGCAGGCAGTTGAAAAATTCAAAGAGCATTCCCCCGACCTAGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACAGCTCTAAAGGAAATTAAACAGATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGCCAGCAGTCAATGGTTATTGACGCGATTCAGGCCGGCGCAAAAGACTTTATCGTGAAACCGTTCCA
AGCGGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383