Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   UP17_RS17390 Genome accession   NZ_CP011008
Coordinates   3734046..3736421 (-) Length   791 a.a.
NCBI ID   WP_061464221.1    Uniprot ID   -
Organism   Peribacillus simplex strain SH-B26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3729046..3741421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP17_RS17365 (UP17_17365) dtd 3729094..3729537 (-) 444 WP_061464218.1 D-aminoacyl-tRNA deacylase -
  UP17_RS17370 (UP17_17370) - 3729553..3731751 (-) 2199 WP_061464219.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  UP17_RS17385 (UP17_17385) - 3733543..3734055 (-) 513 WP_061464220.1 adenine phosphoribosyltransferase -
  UP17_RS17390 (UP17_17390) recJ 3734046..3736421 (-) 2376 WP_061464221.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  UP17_RS17395 (UP17_17395) secDF 3736566..3738827 (-) 2262 WP_061464222.1 protein translocase subunit SecDF -
  UP17_RS17400 (UP17_17400) - 3739025..3739330 (-) 306 WP_061464223.1 post-transcriptional regulator -
  UP17_RS17405 (UP17_17405) spoVB 3739498..3741060 (+) 1563 WP_061464224.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88824.23 Da        Isoelectric Point: 4.7944

>NTDB_id=141388 UP17_RS17390 WP_061464221.1 3734046..3736421(-) (recJ) [Peribacillus simplex strain SH-B26]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIREAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVDEAKLACEL
GMDYILTDHHEPGPELPEALAIIHPKLEDSSYPFEDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLKGENRLI
AAKGIEQLRLTGRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSENLAEAMELANEINDINKE
RQAMVAAMAEEAIQEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDREKGHAKGSARSIAGFDLF
ESLSTCRELLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEQLSEEDFTPITNLDGATTLAEVSVQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGENHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVNHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSEDIYSRYPFLQNQSDLVHIKNGQDADQLDCFEGHVVFMDMPPL
REYLKRVIANKNPSRIYAHLSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
GFVTIENGLIMLTTNAKKRDLSESESYIRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=141388 UP17_RS17390 WP_061464221.1 3734046..3736421(-) (recJ) [Peribacillus simplex strain SH-B26]
ATGTTAAAACCAAAAACCCGGTGGAACTTGCGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGACACGATTGAAAGTGCCCGATCATTTTTATTTGTAAAAA
ATCAAACTTTTCATGATCCATTTTTATTGAAAGATATGGATAAAGCAGTCTATAGAATAAGAGAAGCCATTCAAAATGGA
GAAAAAATACGGATTTTCGGTGATTATGACGCAGATGGCGTGACATCGACCACAGTGATGATGACGGCGCTAACGAGATT
GGGGGCCGATGTGGATTTTTATATCCCGAATCGGTTTACAGAGGGCTACGGTCCGAATCCGATGGCGTTCCGCCTCGCAG
CTGAGCAAGGGGTGAAGGTATTAATAACCGTCGATACCGGAATTTCTGCAGTCGATGAAGCGAAACTTGCCTGCGAGCTT
GGCATGGATTATATTTTGACCGATCACCATGAACCGGGACCGGAATTGCCTGAGGCATTGGCGATTATCCATCCTAAACT
TGAGGACAGTTCCTACCCATTTGAAGATCTTGCCGGAGTAGGTGTCGCTTTTAAGCTGGCACACGCTTTGCTAGGGGAAT
TGCCTGAGGATTTACTTGAAATAGCGGCCATCGGCACCATTGCGGATTTAGTGCCTTTAAAAGGGGAGAACCGCCTCATC
GCTGCGAAAGGGATCGAGCAGTTACGATTGACTGGCCGTCCGGGGCTTGTTGCTCTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCAATCGGTTTTGCGATGGCACCGCGGATCAATGCTGTCGGACGACTTGGAGATGCTGACC
CGGCTGTGGATTTATTGATGTCTGAAAACTTGGCAGAAGCGATGGAACTTGCCAATGAAATCAATGATATTAATAAAGAG
CGTCAGGCGATGGTTGCGGCAATGGCGGAAGAAGCGATTCAAGAGGTTGAGGAAAACTTCCCGCCTGAGTCCAATGGTGT
ACTTATCATCGGGAGAGAAGGCTGGAACGCAGGGGTAGTGGGTATTGTAGCCTCCAAACTGGTTGAACGCTTTTACCGCC
CCACGATTGTATTAAGTTATGACCGGGAAAAGGGGCACGCGAAAGGTTCTGCCCGGAGCATCGCCGGTTTCGATCTTTTT
GAAAGTCTTTCCACCTGCCGTGAATTACTGCCTCATTTTGGTGGACATCCGATGGCTGCTGGAATGACATTGAAAATAGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACCTGATTGCGAAGGAACAGCTCAGCGAAGAGGACTTCACACCAATTACCA
ACTTGGATGGAGCAACCACTCTAGCGGAAGTTTCCGTTCAAACGATTCAGGAAATGAGCTTGCTGGCGCCATTTGGGGTT
ACGAATCCAAAGCCGAAGATTTTGATAGATTCCGTACAGCTTTCAAGTGTCCGAAAAATCGGTGCCAACCAAAATCACTT
GAAAGTGCAGCTTGAAGATGGGGAAAATCATAAACTTGATGGAGTGGGCTTCGGTCTAGGTCATTTTGTGGATGAAATAG
CTCCGCACGCTGAAGTCTCGGTGATTGGAGAGCTTTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTAAACCATTGGCAGTTATTCGATTACCGCGGTAAGGGTCAGGCAGAGAAGTGGCTTGCCGACATTCC
GGCACAAAACCGGAAGATCGTCATTTTCTCGGAAGATATTTATAGTAGATATCCATTTTTACAAAACCAATCCGATCTCG
TTCATATCAAGAATGGACAGGATGCAGATCAGCTCGACTGCTTCGAAGGCCATGTGGTATTTATGGACATGCCGCCGTTA
AGGGAATATTTGAAACGGGTGATTGCCAATAAGAATCCATCGCGTATCTATGCACACCTTTCCCATGAGCAGGACCATTT
CTTAAGTACGATGCCAACAAGGGACCATTTTAAATGGTTTTATGCCTTCCTCGCCAAAAAGGGCCCGCTCGATGTGAAAA
GATATGGTGATGACCTTGCCAAGTACCGCGGGTGGTCAAGAGATACCGTGGATTTCATTTCTAAGGTGTTTTTTGAGCTT
GGTTTTGTTACAATAGAGAATGGGTTAATCATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TATAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-562)

DHHA1 domain (DHHA1)

(307-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.981

100

0.551

Multiple sequence alignment