Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   HSISS4_RS09850 Genome accession   NZ_CP013216
Coordinates   726564..727220 (-) Length   218 a.a.
NCBI ID   WP_080610410.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 721564..732220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS03575 (HSISS4_00673) holA 723302..724336 (+) 1035 WP_059749121.1 DNA polymerase III subunit delta -
  HSISS4_RS03580 (HSISS4_00674) sodA 724432..725037 (+) 606 WP_004182735.1 superoxide dismutase SodA -
  HSISS4_RS03585 (HSISS4_00675) - 725135..726532 (+) 1398 WP_081051372.1 serine hydrolase -
  HSISS4_RS09850 (HSISS4_00676) cclA/cilC 726564..727220 (-) 657 WP_080610410.1 prepilin peptidase Machinery gene
  HSISS4_RS03590 (HSISS4_00677) - 727330..727851 (+) 522 WP_014634248.1 Dps family protein -
  HSISS4_RS03595 (HSISS4_00678) - 727939..728376 (+) 438 WP_002884117.1 Fur family transcriptional regulator -
  HSISS4_RS03600 (HSISS4_00679) - 728479..728685 (+) 207 WP_014634249.1 YqgQ family protein -
  HSISS4_RS03605 (HSISS4_00680) - 728678..729646 (+) 969 WP_002884020.1 ROK family glucokinase -
  HSISS4_RS03610 (HSISS4_00681) typA 729791..731641 (+) 1851 WP_002884130.1 translational GTPase TypA -
  HSISS4_RS03615 (HSISS4_00682) - 731661..731930 (+) 270 WP_002884134.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25155.49 Da        Isoelectric Point: 7.8973

>NTDB_id=139547 HSISS4_RS09850 WP_080610410.1 726564..727220(-) (cclA/cilC) [Streptococcus salivarius strain HSISS4]
MLSIIYFFLGASLGSFIGLICDRFLEKSIIFPSSHCSHCKHQLCFFEMIPILSQLFLRSRCRSCQTPIPLRYLFMELFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLRHKSYPLLIWIVGTVPLLFMGNYYLTFALGITIATLSYMKHLNIGEGDFL
YLASASLIFPFSKILLIIEIACLLGLAYFLLRRNLKECIAFVPFLFLGIVLLTFCSII

Nucleotide


Download         Length: 657 bp        

>NTDB_id=139547 HSISS4_RS09850 WP_080610410.1 726564..727220(-) (cclA/cilC) [Streptococcus salivarius strain HSISS4]
ATGTTAAGTATTATTTATTTTTTTCTAGGAGCCTCTTTAGGTTCATTTATCGGACTAATTTGTGATCGTTTTCTTGAAAA
GTCGATTATTTTTCCTAGTAGTCACTGTAGTCACTGCAAGCATCAGTTGTGTTTTTTCGAGATGATCCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGTTCATGTCAGACTCCTATCCCTCTTCGTTACCTCTTTATGGAACTATTTTGTGGA
GTAATATGCCTTCTATATTTTTATGACTTTTTAAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTCTATCAAT
TTTTGATTTGAGACATAAATCCTATCCGCTTCTGATTTGGATAGTTGGAACAGTCCCACTCTTATTCATGGGCAACTACT
ACCTCACATTTGCCTTGGGGATTACCATCGCTACCCTTTCTTATATGAAACATCTAAATATTGGGGAAGGAGATTTTCTC
TATTTAGCAAGTGCCTCCCTTATTTTCCCATTTTCAAAAATACTACTTATTATCGAAATTGCCTGCCTATTAGGACTAGC
TTACTTCCTTCTACGAAGAAATCTCAAGGAATGCATCGCATTTGTCCCATTTCTTTTTCTAGGGATAGTACTTCTTACTT
TTTGTTCAATTATATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

38.991

100

0.39
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae TIGR4

38.073

100

0.381
  cclA/cilC Streptococcus pneumoniae Rx1

38.318

98.165

0.376
  cclA/cilC Streptococcus pneumoniae D39

38.318

98.165

0.376
  cclA/cilC Streptococcus pneumoniae R6

38.318

98.165

0.376