Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SC10_RS14800 Genome accession   NZ_CP010524
Coordinates   2982916..2985312 (-) Length   798 a.a.
NCBI ID   WP_025811063.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain BL-09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2977916..2990312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC10_RS14785 (SC10_B2orf04462) - 2980863..2981921 (-) 1059 WP_023855376.1 AI-2E family transporter -
  SC10_RS22220 (SC10_B2orf04463) - 2982009..2982140 (-) 132 WP_003183926.1 YrzQ family protein -
  SC10_RS14790 (SC10_B2orf04464) - 2982156..2982347 (-) 192 WP_016885531.1 hypothetical protein -
  SC10_RS14795 (SC10_B2orf04466) - 2982363..2982827 (-) 465 WP_023855377.1 PRC-barrel domain-containing protein -
  SC10_RS14800 (SC10_B2orf04467) recD2 2982916..2985312 (-) 2397 WP_025811063.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SC10_RS14805 (SC10_B2orf04469) - 2985364..2986014 (-) 651 WP_025811062.1 tetratricopeptide repeat protein -
  SC10_RS14810 (SC10_B2orf04472) mnmA 2986109..2987227 (-) 1119 WP_025811061.1 tRNA 2-thiouridine(34) synthase MnmA -
  SC10_RS14815 (SC10_B2orf04473) - 2987333..2988472 (-) 1140 WP_025811060.1 cysteine desulfurase family protein -
  SC10_RS14820 (SC10_B2orf04474) cymR 2988493..2988909 (-) 417 WP_023855382.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89791.43 Da        Isoelectric Point: 4.9434

>NTDB_id=138981 SC10_RS14800 WP_025811063.1 2982916..2985312(-) (recD2) [Bacillus paralicheniformis strain BL-09]
MQRHNPDQIEMEEASFVKGMVAAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIDTRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIDGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLTAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQILAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=138981 SC10_RS14800 WP_025811063.1 2982916..2985312(-) (recD2) [Bacillus paralicheniformis strain BL-09]
ATGCAGCGCCATAACCCGGACCAAATTGAAATGGAAGAAGCTTCATTTGTAAAAGGAATGGTTGCGGCTGTCATTTATCA
TAATGAAACAAACCTGTATACCGTATTAAAGGTAAAAGTGGAAGAAACATCGGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACGGGTTACTTTCCTTTGATCCATGAAGACGATATCTACACTTTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTTAAAAAAGAAGTGCCGACAACAAAAGAAGGCGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAAAAAACGGCCGAGGAAATTGTTAATAAGCTTGGGGAAGGTGCGATCAACAAAATTTTAAGCG
ACGGCGCCGTCCTGTATGATGTTCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTGCAGCAGCATCAG
GGGCTCGAACAGATTATGATCTCCTTGAGCGAATTCGGCTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTATGA
AGCGGAAACGCTTGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAGGATGTCGAAGGAATCGGCTTTATCAAGGCGG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAGGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACATACATAGACACGAGACAGCTCATCATCGAGACGCAAAAACTGTTAAACCAGTCTGC
AGGTGATGAAAAAGTAACCGAGATGGATGTGGCGGACGCGATCATTTCTTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTATTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGTCAAAAAGAAGCGATTCAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACAGGCGGACCGGGAACCGGGAAAA
CGACCGTCATTAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAGGAT
GAAACGTTTCCGTTTGTGCTCGCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGGTTGCCGGCCGT
AACGATTCACAGGCTTCTCGGCTGGAATGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGACGGACGGCTGC
TCATCATTGATGAAACGAGCATGCTTGATATATGGCTCGCCAACCAATTGTTCAAGGCGATTCCCGACCGGATTCAGGTC
ATCATGGTCGGAGATGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTGAGGGATCTTTTGGCATCGAATGTCAT
TCCTTCTGTCAGATTAACCGATATTTACAGGCAGGCTGAAGGCTCTTCCATCGTTGAACTGGCGCATGAAATGAAACAAG
GAAAGCTTCCTGAAAACTTGACCGCGCCGACAAAAGACCGTTCTTTCATTCGCTGCCGCCAGCAGCAGATTAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGGTATTCGGCCAGGGATATTCAGATTTTGGCTCCGATGTACAGGGG
AGCAGCCGGTATCAACGAGTTAAACGCGCTTTTGCAGGGCATCCTGAATCCCCCGAAGCCGAAAGGCAGGGAAATGAAGT
ACGGCGATGTCGTGTACCGTACCGGGGATAAAGTGCTTCAGCTCGTCAACCAGCCGGAACACAACGTGTTTAACGGTGAT
ATGGGTGAGATCGTCTCGATTTTTTATGCAAAAGAAAATACGGAAAAAGAAGATATGGCCGTCGTCTCTTTCGACGGGAA
TGAAATCACCTTTACAAAAAAAGATTTTAACCAATTTACGCACGCCTATTGCTGTTCAATCCACAAATCGCAGGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTATTACCGCATGCTGAGAAGGAACTTGCTTTACACGGCCATCACA
AGAAGCAAGAAATTCCTGATTTTGTGCGGGGAAGAAGAGGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCGGAAAG
GCAGACATCGCTTAAAAGAAGGCTTCAGCAGGCGGCGCATGAAGAGGATGAAGAGCTCATGGCGCTGCAAAAAGAGCTGC
CTTTTAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

81.477

100

0.816

Multiple sequence alignment