Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LACT_RS00040 | Genome accession | NZ_CP010432 |
| Coordinates | 9579..10097 (+) | Length | 172 a.a. |
| NCBI ID | WP_011254001.1 | Uniprot ID | - |
| Organism | Lactobacillus acidophilus strain FSI4 isolate Yogurt | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4579..15097
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LACT_RS00025 (SD55_0005) | gyrB | 4587..6551 (+) | 1965 | WP_003549374.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| LACT_RS00030 (SD55_0006) | gyrA | 6562..9036 (+) | 2475 | WP_003549372.1 | DNA gyrase subunit A | - |
| LACT_RS00035 (SD55_0007) | rpsF | 9237..9533 (+) | 297 | WP_003549370.1 | 30S ribosomal protein S6 | - |
| LACT_RS00040 (SD55_0008) | ssb | 9579..10097 (+) | 519 | WP_011254001.1 | single-stranded DNA-binding protein | Machinery gene |
| LACT_RS00045 (SD55_0009) | rpsR | 10126..10362 (+) | 237 | WP_003549366.1 | 30S ribosomal protein S18 | - |
| LACT_RS00050 (SD55_0010) | - | 10541..12562 (+) | 2022 | WP_003549345.1 | DHH family phosphoesterase | - |
| LACT_RS00055 (SD55_0011) | rplI | 12575..13030 (+) | 456 | WP_003549343.1 | 50S ribosomal protein L9 | - |
| LACT_RS00060 (SD55_0012) | dnaB | 13056..14450 (+) | 1395 | WP_003549341.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18829.48 Da Isoelectric Point: 4.7317
>NTDB_id=137055 LACT_RS00040 WP_011254001.1 9579..10097(+) (ssb) [Lactobacillus acidophilus strain FSI4 isolate Yogurt]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFSLLESRKDREARGQSGGYTPNNGNINNQPANNFQNNGGSQNNPQINNNQSSSQDPFAGSG
DTIDISDDDLPF
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFSLLESRKDREARGQSGGYTPNNGNINNQPANNFQNNGGSQNNPQINNNQSSSQDPFAGSG
DTIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=137055 LACT_RS00040 WP_011254001.1 9579..10097(+) (ssb) [Lactobacillus acidophilus strain FSI4 isolate Yogurt]
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACACGTGATCCTGAATTGCGTACTACTGGAAGTGGAATTTCGGTAGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAGGGTGAGAGAGGCGCAGACTTTATCAGCTGTGTAATCT
GGAGAAAGGCTGCGGAAAACTTCTGTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTGATGGCCGTATTCAAACCAGA
AGCTATGACAATAAAGATGGGCAACGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCTCATTACTTGAATCACGTAA
GGATCGTGAAGCCCGCGGTCAAAGTGGTGGATATACACCAAATAATGGAAATATTAACAATCAACCTGCTAATAATTTCC
AAAATAATGGTGGATCACAAAATAATCCACAGATTAATAACAATCAAAGTTCTTCACAAGATCCATTTGCTGGATCAGGT
GATACTATTGATATTTCTGATGATGATCTTCCATTCTAA
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACACGTGATCCTGAATTGCGTACTACTGGAAGTGGAATTTCGGTAGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAGGGTGAGAGAGGCGCAGACTTTATCAGCTGTGTAATCT
GGAGAAAGGCTGCGGAAAACTTCTGTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTGATGGCCGTATTCAAACCAGA
AGCTATGACAATAAAGATGGGCAACGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCTCATTACTTGAATCACGTAA
GGATCGTGAAGCCCGCGGTCAAAGTGGTGGATATACACCAAATAATGGAAATATTAACAATCAACCTGCTAATAATTTCC
AAAATAATGGTGGATCACAAAATAATCCACAGATTAATAACAATCAAAGTTCTTCACAAGATCCATTTGCTGGATCAGGT
GATACTATTGATATTTCTGATGATGATCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.857 |
100 |
0.64 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.056 |
100 |
0.57 |