Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   AN158_RS05595 Genome accession   NZ_CP012587
Coordinates   1246181..1246696 (+) Length   171 a.a.
NCBI ID   WP_000477147.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CA-17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1241181..1251696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN158_RS05575 (AN158_05570) - 1241509..1242969 (+) 1461 WP_000004971.1 amino acid permease -
  AN158_RS05580 (AN158_05575) - 1243246..1244451 (+) 1206 WP_069370450.1 RtcB family protein -
  AN158_RS17715 (AN158_05580) - 1244470..1244613 (+) 144 WP_162138624.1 hypothetical protein -
  AN158_RS05590 (AN158_05585) omp38 1244738..1245799 (-) 1062 WP_000777885.1 outer membrane protein Omp38 -
  AN158_RS05595 (AN158_05590) fimT 1246181..1246696 (+) 516 WP_000477147.1 GspH/FimT family pseudopilin Machinery gene
  AN158_RS05600 (AN158_05595) - 1246805..1247980 (+) 1176 WP_069370451.1 thiolase family protein -
  AN158_RS05605 (AN158_05600) - 1248108..1248551 (+) 444 WP_001176580.1 VOC family protein -
  AN158_RS05610 (AN158_05605) - 1248594..1248947 (-) 354 WP_000457785.1 DMT family transporter -
  AN158_RS05615 (AN158_05610) - 1249030..1249515 (-) 486 WP_000935247.1 DUF934 domain-containing protein -
  AN158_RS05620 (AN158_05615) - 1249508..1251151 (-) 1644 WP_000281766.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19587.81 Da        Isoelectric Point: 8.4960

>NTDB_id=134698 AN158_RS05595 WP_000477147.1 1246181..1246696(+) (fimT) [Acinetobacter baumannii strain CA-17]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=134698 AN158_RS05595 WP_000477147.1 1246181..1246696(+) (fimT) [Acinetobacter baumannii strain CA-17]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421