Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   A6704_RS27600 Genome accession   NZ_CP012584
Coordinates   6020835..6021359 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain PA_D25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6015835..6026359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6704_RS27585 (A6704_27585) aroB 6016963..6018069 (-) 1107 WP_069376936.1 3-dehydroquinate synthase -
  A6704_RS27590 (A6704_27590) aroK 6018119..6018637 (-) 519 WP_069376937.1 shikimate kinase AroK -
  A6704_RS27595 (A6704_27595) pilQ 6018649..6020781 (-) 2133 WP_069376938.1 type 4a pilus secretin PilQ Machinery gene
  A6704_RS27600 (A6704_27600) comL/pilP 6020835..6021359 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  A6704_RS27605 (A6704_27605) pilO 6021356..6021979 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  A6704_RS27610 (A6704_27610) pilN 6021976..6022572 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  A6704_RS27615 (A6704_27615) pilM 6022572..6023636 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  A6704_RS27620 (A6704_27620) - 6023821..6026292 (+) 2472 WP_043088268.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=134563 A6704_RS27600 WP_003116136.1 6020835..6021359(-) (comL/pilP) [Pseudomonas aeruginosa strain PA_D25]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=134563 A6704_RS27600 WP_003116136.1 6020835..6021359(-) (comL/pilP) [Pseudomonas aeruginosa strain PA_D25]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCAGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GACGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362