Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6704_RS02100 Genome accession   NZ_CP012584
Coordinates   450150..450515 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PA_D25     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445150..455515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6704_RS02070 (A6704_02070) pyrR 445772..446284 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  A6704_RS02075 (A6704_02075) ruvX 446396..446830 (-) 435 WP_023098361.1 Holliday junction resolvase RuvX -
  A6704_RS02080 (A6704_02080) - 446830..447399 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  A6704_RS02085 (A6704_02085) - 447448..448341 (-) 894 WP_003084580.1 TonB family protein -
  A6704_RS02090 (A6704_02090) gshB 448488..449441 (-) 954 WP_003100943.1 glutathione synthase -
  A6704_RS02095 (A6704_02095) pilG 449696..450103 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  A6704_RS02100 (A6704_02100) pilH 450150..450515 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  A6704_RS02105 (A6704_02105) - 450566..451102 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  A6704_RS02110 (A6704_02110) pilJ 451187..453235 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  A6704_RS02115 (A6704_02115) pilK 453296..454171 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=134496 A6704_RS02100 WP_003084587.1 450150..450515(+) (pilH) [Pseudomonas aeruginosa strain PA_D25]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=134496 A6704_RS02100 WP_003084587.1 450150..450515(+) (pilH) [Pseudomonas aeruginosa strain PA_D25]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364