Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   AMM49_RS09955 Genome accession   NZ_CP012480
Coordinates   1990234..1990824 (-) Length   196 a.a.
NCBI ID   WP_000272489.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NGBS128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985234..1995824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMM49_RS09920 (AMM49_09910) - 1985255..1985572 (-) 318 WP_000940933.1 DUF1292 domain-containing protein -
  AMM49_RS09925 (AMM49_09915) ruvX 1985598..1986017 (-) 420 WP_001873911.1 Holliday junction resolvase RuvX -
  AMM49_RS09930 (AMM49_09920) - 1986017..1986283 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  AMM49_RS09935 (AMM49_09925) spx 1986485..1986883 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  AMM49_RS09940 (AMM49_09930) recA 1987099..1988238 (-) 1140 WP_001085741.1 recombinase RecA Machinery gene
  AMM49_RS09945 (AMM49_09935) cinA 1988312..1989571 (-) 1260 WP_001200982.1 competence/damage-inducible protein A Machinery gene
  AMM49_RS09950 (AMM49_09940) - 1989660..1990211 (-) 552 WP_000817340.1 DNA-3-methyladenine glycosylase I -
  AMM49_RS09955 (AMM49_09945) ruvA 1990234..1990824 (-) 591 WP_000272489.1 Holliday junction branch migration protein RuvA Machinery gene
  AMM49_RS09960 (AMM49_09950) - 1990826..1992058 (-) 1233 WP_000657474.1 MDR family MFS transporter -
  AMM49_RS09965 (AMM49_09955) hexB 1992090..1994063 (-) 1974 WP_000034615.1 DNA mismatch repair endonuclease MutL Machinery gene
  AMM49_RS09970 (AMM49_09960) - 1994289..1994492 (+) 204 WP_000191849.1 cold-shock protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21682.92 Da        Isoelectric Point: 5.7448

>NTDB_id=133799 AMM49_RS09955 WP_000272489.1 1990234..1990824(-) (ruvA) [Streptococcus agalactiae strain NGBS128]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNDTVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=133799 AMM49_RS09955 WP_000272489.1 1990234..1990824(-) (ruvA) [Streptococcus agalactiae strain NGBS128]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACGGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGATACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

68.02

100

0.684
  ruvA Streptococcus pneumoniae D39

68.02

100

0.684
  ruvA Streptococcus pneumoniae TIGR4

67.513

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408

Multiple sequence alignment