Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   FORC9_RS01260 Genome accession   NZ_CP009984
Coordinates   257169..257681 (+) Length   170 a.a.
NCBI ID   WP_060530656.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_009     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 252169..262681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC9_RS01240 (FORC9_0224) - 252356..254869 (-) 2514 WP_060530655.1 penicillin-binding protein 1A -
  FORC9_RS01245 (FORC9_0225) pilM 255009..256016 (+) 1008 WP_011151279.1 type IV pilus assembly protein PilM Machinery gene
  FORC9_RS01250 (FORC9_0226) pilN 256006..256596 (+) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  FORC9_RS01255 (FORC9_0227) pilO 256589..257179 (+) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  FORC9_RS01260 (FORC9_0228) pilP 257169..257681 (+) 513 WP_060530656.1 pilus assembly protein PilP Machinery gene
  FORC9_RS01265 (FORC9_0229) pilQ 257695..259479 (+) 1785 WP_011079356.1 type IV pilus secretin PilQ Machinery gene
  FORC9_RS01270 (FORC9_0230) aroK 259681..260199 (+) 519 WP_011079357.1 shikimate kinase AroK -
  FORC9_RS01275 (FORC9_0231) aroB 260232..261323 (+) 1092 WP_017789764.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19060.21 Da        Isoelectric Point: 10.2810

>NTDB_id=133450 FORC9_RS01260 WP_060530656.1 257169..257681(+) (pilP) [Vibrio vulnificus strain FORC_009]
MRSSLSLVAVLVLLSGCRANTEPMEGFIRQVESEARQEMAKLQPEREYIPIDYLARENRRPFELPKEAVIASQPVVKKDC
WQPPLRAKNGKLERYPLSQLRLKGVMGSGNTIAGLVQTPQGKVEKVHPGQFIGQNNGKVTVVTPSYILINETLPDGLGCW
QQRKVRLALR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=133450 FORC9_RS01260 WP_060530656.1 257169..257681(+) (pilP) [Vibrio vulnificus strain FORC_009]
ATGAGAAGTAGTTTATCGCTCGTCGCTGTGCTGGTCTTGCTGTCGGGTTGTCGAGCGAATACCGAACCGATGGAAGGTTT
TATCCGCCAAGTTGAATCGGAAGCACGTCAAGAAATGGCCAAGTTACAGCCAGAGCGCGAGTACATCCCGATTGATTACT
TAGCTCGAGAAAATCGCCGTCCTTTTGAATTACCTAAGGAAGCCGTGATTGCCTCTCAACCTGTCGTTAAGAAAGACTGC
TGGCAGCCACCTTTACGGGCTAAAAATGGCAAGTTGGAGCGTTATCCACTTAGCCAATTGCGTCTGAAAGGAGTGATGGG
GAGTGGCAATACCATTGCTGGTCTCGTACAGACTCCACAAGGCAAAGTGGAGAAAGTTCACCCAGGGCAATTTATCGGCC
AGAACAATGGCAAAGTGACCGTAGTAACGCCGTCTTACATATTGATCAATGAAACCCTTCCTGATGGTTTAGGTTGCTGG
CAGCAACGTAAAGTCAGACTGGCATTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

63.473

98.235

0.624
  pilP Vibrio cholerae strain A1552

59.036

97.647

0.576

Multiple sequence alignment