Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | PN96_RS15050 | Genome accession | NZ_CP009977 |
| Coordinates | 3223391..3223984 (+) | Length | 197 a.a. |
| NCBI ID | WP_020334615.1 | Uniprot ID | A0AAN1CWF1 |
| Organism | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3218391..3228984
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PN96_RS15035 (PN96_14825) | - | 3219112..3221679 (-) | 2568 | WP_020334618.1 | PBP1A family penicillin-binding protein | - |
| PN96_RS15040 (PN96_14830) | pilM | 3221823..3222839 (+) | 1017 | WP_020334617.1 | type IV pilus assembly protein PilM | Machinery gene |
| PN96_RS15045 (PN96_14835) | pilN | 3222823..3223398 (+) | 576 | WP_024372660.1 | PilN domain-containing protein | Machinery gene |
| PN96_RS15050 (PN96_14840) | pilO | 3223391..3223984 (+) | 594 | WP_020334615.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| PN96_RS15055 (PN96_14845) | pilP | 3223974..3224489 (+) | 516 | WP_020334614.1 | pilus assembly protein PilP | Machinery gene |
| PN96_RS15060 (PN96_14850) | pilQ | 3224521..3226260 (+) | 1740 | WP_024372659.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| PN96_RS15065 (PN96_14855) | aroK | 3226449..3226967 (+) | 519 | WP_014233147.1 | shikimate kinase AroK | - |
| PN96_RS15070 (PN96_14860) | aroB | 3226999..3228099 (+) | 1101 | WP_020334612.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23102.59 Da Isoelectric Point: 4.7130
>NTDB_id=133347 PN96_RS15050 WP_020334615.1 3223391..3223984(+) (pilO) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MVNWQDLEMDEIAEWPLIPQLLVISLLILLLQGFGYWLYLVPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRAHTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLIPQLLVISLLILLLQGFGYWLYLVPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRAHTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=133347 PN96_RS15050 WP_020334615.1 3223391..3223984(+) (pilO) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATCCCTCAGTTGCTAGTCATTAGTTTGTT
GATCCTGTTGCTCCAAGGTTTCGGCTATTGGCTGTACTTGGTGCCTAAGGAAGAGCGATTAAATGACCTCATCCAGCAGG
AAGAAACACTCAAAGTTGCGTTACGAATTAAAGCCAACAAGGTTGCCGCATTACCGCAGCTCCAATCTCAGTTAGATGAA
TTGACTACACGTTACGAGTTGTTGTTGCAGCAATTACCCGCCCAGAAAGAGTTAGCCACCATGCTGGCGTCCGTTAATGA
GCTCGGCATAGACAATAAACTGACCTTCACCCGAATTGACTGGGGAGAAAAGCAGTCTGATCACTTTTTGTATCAGCTGC
CACTTAACATCGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCACGCATCATC
ACTTTTCAAGATGTGACTTGGCAACGCGTCAGTCAGGAGAGTGAAACGCTGCACTTCCGGGTAAGAGCTCATACCTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAAAAATAA
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATCCCTCAGTTGCTAGTCATTAGTTTGTT
GATCCTGTTGCTCCAAGGTTTCGGCTATTGGCTGTACTTGGTGCCTAAGGAAGAGCGATTAAATGACCTCATCCAGCAGG
AAGAAACACTCAAAGTTGCGTTACGAATTAAAGCCAACAAGGTTGCCGCATTACCGCAGCTCCAATCTCAGTTAGATGAA
TTGACTACACGTTACGAGTTGTTGTTGCAGCAATTACCCGCCCAGAAAGAGTTAGCCACCATGCTGGCGTCCGTTAATGA
GCTCGGCATAGACAATAAACTGACCTTCACCCGAATTGACTGGGGAGAAAAGCAGTCTGATCACTTTTTGTATCAGCTGC
CACTTAACATCGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCACGCATCATC
ACTTTTCAAGATGTGACTTGGCAACGCGTCAGTCAGGAGAGTGAAACGCTGCACTTCCGGGTAAGAGCTCATACCTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
88.947 |
96.447 |
0.858 |
| pilO | Vibrio cholerae strain A1552 |
70.558 |
100 |
0.706 |