Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AEI25_RS05120 Genome accession   NZ_CP012242
Coordinates   964034..964585 (+) Length   183 a.a.
NCBI ID   WP_178890187.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ055CCUA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 959034..969585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI25_RS05085 (AEI25_05085) - 959223..959648 (+) 426 WP_002921415.1 GNAT family N-acetyltransferase -
  AEI25_RS05090 (AEI25_05090) - 959713..960333 (+) 621 WP_178890184.1 NAD(P)H-dependent oxidoreductase -
  AEI25_RS05095 (AEI25_05095) - 960333..960938 (+) 606 WP_002871788.1 NAD(P)H-dependent oxidoreductase -
  AEI25_RS05100 (AEI25_05100) pgsA 961063..961599 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AEI25_RS05105 (AEI25_05105) rseP 961596..962702 (+) 1107 WP_178890185.1 RIP metalloprotease RseP -
  AEI25_RS05110 (AEI25_05110) - 962695..963561 (+) 867 WP_260627763.1 VirK family antimicrobial peptide resistance protein -
  AEI25_RS05115 (AEI25_05115) rpsF 963648..964025 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  AEI25_RS05120 (AEI25_05120) ssb 964034..964585 (+) 552 WP_178890187.1 single-stranded DNA-binding protein Machinery gene
  AEI25_RS05125 (AEI25_05125) rpsR 964596..964856 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI25_RS05130 (AEI25_05130) lon 964918..967293 (-) 2376 WP_260627764.1 endopeptidase La -
  AEI25_RS05135 (AEI25_05135) bamD 967310..967957 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  AEI25_RS05140 (AEI25_05140) fliW 968118..968507 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI25_RS05145 (AEI25_05145) proC 968507..969238 (+) 732 WP_002932769.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI25_RS05150 (AEI25_05150) ctsT 969235..969537 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20713.60 Da        Isoelectric Point: 5.0431

>NTDB_id=132871 AEI25_RS05120 WP_178890187.1 964034..964585(+) (ssb) [Campylobacter jejuni strain CJ055CCUA]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSSTPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=132871 AEI25_RS05120 WP_178890187.1 964034..964585(+) (ssb) [Campylobacter jejuni strain CJ055CCUA]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCTGCTATCGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAGGAAACTTGCTTTATTGATATAAGTT
TTTATGGTCGTACTGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTGCTTATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATACAAGTTGAAAATATGGAAATGCTTGGAAATTC
CAGCACTCCACAACAAGGTGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

39.037

100

0.399

Multiple sequence alignment