Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OB04_RS11150 Genome accession   NZ_CP009796
Coordinates   2180698..2181318 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2175698..2186318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS11110 (OB04_02177) ptsA 2176832..2177338 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  OB04_RS11115 (OB04_02178) ypqA 2177476..2177895 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  OB04_RS11120 (OB04_02179) sppG 2177916..2178293 (-) 378 WP_004398696.1 YppG family protein -
  OB04_RS11125 (OB04_02180) yppF 2178480..2178668 (+) 189 WP_003230690.1 YppF family protein -
  OB04_RS11130 (OB04_02181) yppE 2178707..2179078 (-) 372 WP_003246080.1 YppE family protein -
  OB04_RS11135 (OB04_02182) yppD 2179124..2179369 (-) 246 WP_004398488.1 YppD family protein -
  OB04_RS11140 (OB04_02183) sspM 2179566..2179670 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  OB04_RS11145 (OB04_02184) yppC 2179695..2180657 (-) 963 WP_015251830.1 DUF2515 domain-containing protein -
  OB04_RS11150 (OB04_02185) recU 2180698..2181318 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  OB04_RS11155 (OB04_02186) ponA 2181340..2184099 (+) 2760 WP_038429203.1 PBP1A family penicillin-binding protein -
  OB04_RS11160 (OB04_02187) ypoC 2184175..2184669 (-) 495 WP_009967579.1 YpoC family protein -
  OB04_RS11165 (OB04_02188) nth 2184666..2185325 (-) 660 WP_009967580.1 endonuclease III -
  OB04_RS11170 (OB04_02189) dnaD 2185344..2186042 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=132333 OB04_RS11150 WP_004399067.1 2180698..2181318(+) (recU) [Bacillus subtilis strain SG6]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=132333 OB04_RS11150 WP_004399067.1 2180698..2181318(+) (recU) [Bacillus subtilis strain SG6]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment