Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   VT05_RS01035 Genome accession   NZ_CP012026
Coordinates   190971..191444 (+) Length   157 a.a.
NCBI ID   WP_025462870.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA19     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185971..196444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT05_RS01010 (VT05_00198) dnaB 186488..187891 (+) 1404 WP_003692818.1 replicative DNA helicase -
  VT05_RS16295 - 187885..187997 (-) 113 Protein_195 IS5/IS1182 family transposase -
  VT05_RS01015 (VT05_00199) pilH 188148..188813 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  VT05_RS01020 (VT05_00200) pilV 188845..189453 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Regulator
  VT05_RS01025 (VT05_00201) pilJ 189450..190382 (+) 933 WP_003692822.1 PilW family protein Machinery gene
  VT05_RS01030 (VT05_00202) pilK 190361..190969 (+) 609 WP_003692823.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  VT05_RS01035 (VT05_00203) pilL 190971..191444 (+) 474 WP_025462870.1 PilX family type IV pilin Machinery gene
  VT05_RS01045 - 192056..192501 (-) 446 Protein_201 AzlC family ABC transporter permease -
  VT05_RS01050 (VT05_00205) dut 192667..193119 (+) 453 WP_003692832.1 dUTP diphosphatase -
  VT05_RS01055 (VT05_00206) dapC 193191..194378 (+) 1188 WP_003692834.1 succinyldiaminopimelate transaminase -
  VT05_RS01060 (VT05_00207) yaaA 194534..195313 (+) 780 WP_003692836.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17419.15 Da        Isoelectric Point: 9.5687

>NTDB_id=130769 VT05_RS01035 WP_025462870.1 190971..191444(+) (pilL) [Neisseria gonorrhoeae strain FA19]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNQIIKSKLETFVSGYKM
NPKIAKKYSVSVQFVDAEKPRAYRLVGVPNAGTGYTLSVWVNSVGDGYKCRDAASAKAYKEQLSGDGGCEALSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=130769 VT05_RS01035 WP_025462870.1 190971..191444(+) (pilL) [Neisseria gonorrhoeae strain FA19]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGCAGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACCTTGTCGGTATGGGTGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCGGCAAAGGCCTATAAAGAGCAGTTGTCCGGAGACGGTGGTTGTGAAGCCTTATCCAACCGTAAGAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

90.446

100

0.904
  pilX Neisseria meningitidis 8013

85.987

100

0.86