Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LV28_RS37280 Genome accession   NZ_CP009553
Coordinates   2988383..2989756 (-) Length   457 a.a.
NCBI ID   WP_023874151.1    Uniprot ID   A0A378YAD7
Organism   Pandoraea pnomenusa strain DSM 16536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2983383..2994756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV28_RS37265 (LV28_00900) prmB 2983690..2984586 (+) 897 WP_023596262.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  LV28_RS37270 (LV28_00895) cls 2984715..2986142 (+) 1428 WP_023596263.1 cardiolipin synthase -
  LV28_RS37275 (LV28_00890) - 2986291..2988234 (+) 1944 WP_038617318.1 ATP-binding cassette domain-containing protein -
  LV28_RS37280 (LV28_00885) radA 2988383..2989756 (-) 1374 WP_023874151.1 DNA repair protein RadA Machinery gene
  LV28_RS37285 (LV28_00880) alr 2989780..2990850 (-) 1071 WP_023874150.1 alanine racemase -
  LV28_RS37290 (LV28_00875) lplT 2991189..2992481 (+) 1293 WP_023596267.1 lysophospholipid transporter LplT -
  LV28_RS37295 (LV28_00870) thiD 2992483..2993316 (+) 834 WP_038617315.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LV28_RS37300 (LV28_00865) - 2993335..2994609 (-) 1275 WP_048806327.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48164.34 Da        Isoelectric Point: 7.2033

>NTDB_id=130153 LV28_RS37280 WP_023874151.1 2988383..2989756(-) (radA) [Pandoraea pnomenusa strain DSM 16536]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAETSTGHRYQSLAKSTPVRKLAQIEAADVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRSAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKISEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEQAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=130153 LV28_RS37280 WP_023874151.1 2988383..2989756(-) (radA) [Pandoraea pnomenusa strain DSM 16536]
ATGGCCAAAGCCAAGACTGTCTATATCTGTACCGAGTGCGGCGGGCAGACGCCCAAGTGGGCGGGGCAATGTCCCAACTG
CAACGGCTGGAATACCCTCGTCGAGTCGGTGGCCGAAACGTCGACCGGCCACCGGTACCAGTCGCTCGCCAAGAGCACGC
CGGTGCGCAAGCTCGCGCAGATCGAAGCGGCCGACGTGCCGCGATTTTCCAGCGGTGTGAGTGAATTCGACCGGGTGCTC
GGCGGCGGGCTCGTCGCCGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGAATCGGCAAGTCGACGCTGCTGCTCCAGTC
CCTGGCGCATCTGGCGCGCGAGCGCCGCGCGCTTTACGTGAGCGGCGAAGAGTCCGGCGCGCAGATTGCGCTGCGCGCGC
AGCGACTGGGCCTCGGTGCGGCGGGCGAGGGCGGCGGTGAGCTCGATCTGCTTGCCGAAATCCAGTTGGAGAAGATTCTC
GGCGCGATCGAATCGGAAAAGCCGGATGTCGTGGTGATCGATTCGATCCAGACCATTTACTCCGAAGCCCTCACCTCGGC
GCCCGGTTCGGTGGCCCAGGTGCGCGAGTGTGCGGCCCAACTCACACGCAGTGCGAAGCAAAGCGGCGTGACCGTCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAGTCTGGCCGGGCCACGCGTGCTTGAACACATCGTCGACACCGTGCTGTATTTC
GAAGGCGACACGCATTCGTCCTATCGCCTCGTTCGCGCGTTCAAGAATCGATTCGGCGCGGTCAACGAACTGGGCGTTTT
CGCCATGACGGAAAAAGGGCTGCGCGGGGTGGCGAATCCGTCGGCCCTGTTCCTTTCGCAGCATGAGCAGAGCGTGCCGG
GCTCCTGCGTGCTGGTGACCCAGGAGGGCACCCGTCCGCTGCTCGTCGAAGTGCAGGCGCTGGTGGATACGGCCCAGGTG
CCGAATCCGCGTCGTCTGGCGGTGGGATTGGAGCAGAACCGGCTGGCGATGTTGCTGGCGGTCATGCATCGTCACGCCGG
CATCGCCTGCTTCGATCAGGATGTGTTCCTCAATGCCGTGGGCGGTGTGAAGATTTCGGAGCCGGCGGCCGACCTGGCCG
TGCTGCTGGCGATCCACTCGTCGCTGCGCAACAAGCCCTTGCCGCGCGGCATCGTCGCGTTTGGCGAAGTCGGGCTGGCC
GGGGAAATCCGGCCGAGCCCGCGGGGGCAGGATCGTCTCAAGGAAGCCGCGAAGCTCGGCTTCTCGATTGCCATCATTCC
GAAGGCGAACGCGCCCAAACAACCCATCGACGGTCTTGAAGTGCATGCCGTCGACCGTCTGGAGCAGGCGATTTCGGTCG
TGGCCGGATTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378YAD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.188

100

0.495
  radA Streptococcus pneumoniae Rx1

48.605

94.092

0.457
  radA Streptococcus pneumoniae D39

48.605

94.092

0.457
  radA Streptococcus pneumoniae R6

48.605

94.092

0.457
  radA Streptococcus pneumoniae TIGR4

48.605

94.092

0.457
  radA Streptococcus mitis SK321

48.605

94.092

0.457
  radA Streptococcus mitis NCTC 12261

48.605

94.092

0.457

Multiple sequence alignment