Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PA50071_RS26300 Genome accession   NZ_CP012001
Coordinates   5727088..5727612 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa DSM 50071 = NBRC 12689 strain DSM 50071     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5722088..5732612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA50071_RS26285 (PA50071_26295) aroB 5723204..5724310 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  PA50071_RS26290 (PA50071_26300) aroK 5724360..5724878 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PA50071_RS26295 (PA50071_26305) pilQ 5724890..5727034 (-) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  PA50071_RS26300 (PA50071_26310) comL/pilP 5727088..5727612 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PA50071_RS26305 (PA50071_26315) pilO 5727609..5728232 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PA50071_RS26310 (PA50071_26320) pilN 5728229..5728825 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PA50071_RS26315 (PA50071_26325) pilM 5728825..5729889 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PA50071_RS26320 (PA50071_26330) - 5730074..5732545 (+) 2472 WP_003103276.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=130083 PA50071_RS26300 WP_003095836.1 5727088..5727612(-) (comL/pilP) [Pseudomonas aeruginosa DSM 50071 = NBRC 12689 strain DSM 50071]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=130083 PA50071_RS26300 WP_003095836.1 5727088..5727612(-) (comL/pilP) [Pseudomonas aeruginosa DSM 50071 = NBRC 12689 strain DSM 50071]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment