Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACJ74_RS19415 Genome accession   NZ_CP011915
Coordinates   3804358..3804834 (-) Length   158 a.a.
NCBI ID   WP_001313574.1    Uniprot ID   -
Organism   Escherichia coli strain PSUO2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3799358..3809834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ74_RS19370 (ACJ74_18720) ghrA 3799525..3800463 (-) 939 WP_000351277.1 glyoxylate/hydroxypyruvate reductase GhrA -
  ACJ74_RS19380 (ACJ74_18730) - 3800934..3801776 (-) 843 WP_001280460.1 DUF4942 domain-containing protein -
  ACJ74_RS19385 (ACJ74_18735) - 3801869..3802066 (-) 198 WP_000839257.1 DUF957 domain-containing protein -
  ACJ74_RS19390 (ACJ74_18740) - 3802078..3802569 (-) 492 WP_000976859.1 DUF5983 family protein -
  ACJ74_RS19395 (ACJ74_18745) - 3802566..3802940 (-) 375 WP_001094434.1 TA system toxin CbtA family protein -
  ACJ74_RS19400 (ACJ74_18750) - 3802987..3803361 (-) 375 WP_001285482.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACJ74_RS19405 (ACJ74_18755) - 3803411..3804055 (-) 645 WP_000086762.1 hypothetical protein -
  ACJ74_RS19410 (ACJ74_18760) - 3804074..3804295 (-) 222 WP_000692315.1 DUF987 domain-containing protein -
  ACJ74_RS19415 (ACJ74_18765) radC 3804358..3804834 (-) 477 WP_001313574.1 JAB domain-containing protein Machinery gene
  ACJ74_RS19420 (ACJ74_18770) - 3804850..3805323 (-) 474 WP_001313575.1 antirestriction protein -
  ACJ74_RS19430 (ACJ74_18780) - 3805660..3806481 (-) 822 WP_088895569.1 DUF932 domain-containing protein -
  ACJ74_RS19445 (ACJ74_18785) - 3806812..3809658 (-) 2847 WP_000820442.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17749.42 Da        Isoelectric Point: 7.6152

>NTDB_id=129844 ACJ74_RS19415 WP_001313574.1 3804358..3804834(-) (radC) [Escherichia coli strain PSUO2]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=129844 ACJ74_RS19415 WP_001313574.1 3804358..3804834(-) (radC) [Escherichia coli strain PSUO2]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
TAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGGCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment