Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AS86_RS25355 Genome accession   NZ_CP009351
Coordinates   3827554..3827838 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis HD1002     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3822554..3832838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS86_RS25340 (AS86_3941) rnmV 3823385..3823942 (-) 558 WP_000692840.1 ribonuclease M5 -
  AS86_RS25345 (AS86_3942) - 3824158..3824925 (-) 768 WP_000895845.1 TatD family hydrolase -
  AS86_RS25350 (AS86_3943) metG 3825092..3827074 (-) 1983 WP_000134138.1 methionine--tRNA ligase -
  AS86_RS25355 (AS86_3944) abrB 3827554..3827838 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AS86_RS25360 (AS86_3945) rsmI 3827859..3828734 (-) 876 WP_000267816.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AS86_RS25365 (AS86_3946) - 3828703..3828993 (-) 291 WP_000414353.1 GIY-YIG nuclease family protein -
  AS86_RS25370 (AS86_3947) - 3828980..3829720 (-) 741 WP_001055358.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AS86_RS25375 (AS86_3948) yabA 3829803..3830153 (-) 351 WP_000412064.1 DNA replication initiation control protein YabA -
  AS86_RS25380 (AS86_3949) - 3830168..3830995 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  AS86_RS25385 (AS86_3950) holB 3831001..3831984 (-) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  AS86_RS25390 (AS86_3951) tmk 3832020..3832646 (-) 627 WP_000677218.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=128804 AS86_RS25355 WP_000843036.1 3827554..3827838(+) (abrB) [Bacillus thuringiensis HD1002]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=128804 AS86_RS25355 WP_000843036.1 3827554..3827838(+) (abrB) [Bacillus thuringiensis HD1002]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment