Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AS86_RS15650 Genome accession   NZ_CP009351
Coordinates   1968857..1969144 (-) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis HD1002     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1963857..1974144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS86_RS15615 (AS86_2003) - 1963941..1964417 (-) 477 WP_001018103.1 DUF664 domain-containing protein -
  AS86_RS15620 (AS86_2004) - 1964614..1964961 (+) 348 WP_000426317.1 DUF4257 domain-containing protein -
  AS86_RS15625 (AS86_2005) - 1965046..1965270 (+) 225 WP_000162602.1 hypothetical protein -
  AS86_RS15630 - 1965590..1966228 (-) 639 Protein_1996 MFS transporter -
  AS86_RS15635 (AS86_2007) - 1966244..1967179 (-) 936 WP_000877948.1 aldo/keto reductase -
  AS86_RS15640 (AS86_2008) - 1967286..1967594 (+) 309 WP_001259903.1 ArsR/SmtB family transcription factor -
  AS86_RS15645 (AS86_2009) - 1967634..1968581 (-) 948 WP_000099758.1 serine protease -
  AS86_RS15650 (AS86_2010) abrB 1968857..1969144 (-) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AS86_RS15655 - 1969260..1971141 (-) 1882 Protein_2001 ABC transporter permease -
  AS86_RS15660 (AS86_2013) nadE 1971417..1972235 (+) 819 WP_000174897.1 ammonia-dependent NAD(+) synthetase -
  AS86_RS15665 (AS86_2014) - 1972277..1972738 (-) 462 WP_000024996.1 NUDIX hydrolase -
  AS86_RS35220 - 1972767..1972964 (-) 198 WP_014895224.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=128786 AS86_RS15650 WP_000648324.1 1968857..1969144(-) (abrB) [Bacillus thuringiensis HD1002]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=128786 AS86_RS15650 WP_000648324.1 1968857..1969144(-) (abrB) [Bacillus thuringiensis HD1002]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTGCAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment