Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AA958_RS17875 Genome accession   NZ_CP011492
Coordinates   4203736..4205190 (-) Length   484 a.a.
NCBI ID   WP_047017068.1    Uniprot ID   -
Organism   Streptomyces sp. CNQ-509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4198736..4210190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA958_RS17855 (AA958_17855) - 4198791..4200662 (-) 1872 WP_047017064.1 BACON domain-containing protein -
  AA958_RS17860 (AA958_17860) - 4200736..4201314 (-) 579 WP_047017065.1 phosphatase PAP2 family protein -
  AA958_RS17865 (AA958_17865) - 4201442..4202314 (+) 873 WP_047017066.1 hypothetical protein -
  AA958_RS17870 (AA958_17870) disA 4202501..4203625 (-) 1125 WP_047017067.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AA958_RS17875 (AA958_17875) radA/sms 4203736..4205190 (-) 1455 WP_047017068.1 DNA repair protein RadA Machinery gene
  AA958_RS17880 (AA958_17880) ilvD 4205351..4207204 (+) 1854 WP_047017069.1 dihydroxy-acid dehydratase -
  AA958_RS17885 (AA958_17885) - 4207324..4207827 (+) 504 WP_047017070.1 hypothetical protein -
  AA958_RS17890 (AA958_17890) - 4207868..4208467 (-) 600 WP_047017071.1 TetR/AcrR family transcriptional regulator -
  AA958_RS17895 (AA958_17895) - 4208584..4209798 (+) 1215 WP_047017072.1 MFS transporter -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 50688.07 Da        Isoelectric Point: 7.9792

>NTDB_id=128535 AA958_RS17875 WP_047017068.1 4203736..4205190(-) (radA/sms) [Streptomyces sp. CNQ-509]
MASRKSGGRDRPAYRCAECGWSTVKWLGRCPECQAWGTIEEVGAPAVKTTAAGRVTTPALPIAQVDARRVEARSTGVPEL
DRVLGGGLVPGAVVLMAGEPGVGKSTLLLDVAAKAAVGGERTLYVTGEESAGQVRLRADRIGALSDGLYLAAETDLAAVL
AHLDEVRPALLVLDSVQTVASGEIDGAPGGMAQVREVAGALIRASKERGMATILVGHVTKDGAIAGPRLLEHLVDVVLHI
EGDRHARLRLVRGMKNRYGATDEVGCFELHDEGIIGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGDIRALSKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVARRLAEAARLGFTQALVPADPGKVPAGMKVREVADIGDALRALPAGRRRTGGGSREPAGEREPRESRQPE
EARR

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=128535 AA958_RS17875 WP_047017068.1 4203736..4205190(-) (radA/sms) [Streptomyces sp. CNQ-509]
ATGGCTTCCCGAAAGAGCGGCGGCAGGGACCGCCCCGCGTACCGCTGCGCCGAGTGCGGCTGGTCCACCGTGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGATCGAGGAGGTCGGCGCGCCCGCGGTCAAGACCACGGCCGCCGGCC
GGGTCACGACGCCGGCGCTGCCCATCGCCCAGGTCGACGCCCGCCGCGTCGAGGCCCGCTCCACCGGCGTGCCGGAGCTG
GACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGCGCGGTGGTACTGATGGCCGGCGAGCCCGGCGTGGGGAAGTCGACGCT
GCTGCTCGACGTCGCGGCGAAGGCCGCGGTCGGCGGCGAGCGCACGCTGTACGTGACGGGAGAGGAGTCCGCCGGCCAGG
TCCGGCTGCGGGCCGACCGCATCGGGGCGCTGAGCGACGGGCTGTATCTGGCCGCCGAGACCGACCTCGCCGCCGTCCTC
GCCCACCTCGACGAGGTCAGGCCCGCTCTGCTGGTGCTGGACTCCGTGCAGACCGTCGCCTCCGGCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTGCGGGAGGTCGCCGGCGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGATCC
TCGTCGGGCACGTGACGAAGGACGGCGCCATCGCGGGCCCCCGCCTGCTGGAGCACCTGGTGGACGTCGTGCTGCACATC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCATGAAGAACAGGTACGGCGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCATCGGCCTCGCCGACCCCAGCGGCCTCTTCCTCACCCGGCGGGACGAGCCCGTGCCCG
GGACCTGCCTGACGGTGACCCTGGAGGGCCGCAGGCCGCTGGTCGCGGAGGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCCCGGCGCACCACGTCAGGGCTCGAGACCTCCCGGGTCTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGCGA
CATCCGCGCCCTCTCCAAGCGGGACATCTACAGCGCCACCGTCGGCGGGGTGAAGCTCTCCGAGCCGGCCGCCGACCTGG
CCGTCGCGCTCGCGCTGGCCAGCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGGCTC
GCCGGCGAGGTGCGGCGGGTGACCGGGGTGGCCAGGCGGCTGGCGGAGGCGGCCCGGCTGGGGTTCACGCAGGCGCTCGT
ACCGGCGGATCCGGGCAAGGTCCCCGCAGGCATGAAAGTCAGGGAAGTCGCGGACATAGGGGACGCGTTGCGCGCGCTGC
CCGCCGGCCGGCGGCGCACCGGCGGCGGGTCCCGGGAGCCGGCCGGAGAGAGGGAGCCGAGGGAGTCCCGGCAGCCCGAG
GAGGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(75-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.046

93.595

0.403
  radA Streptococcus pneumoniae D39

42.826

93.595

0.401
  radA Streptococcus pneumoniae R6

42.826

93.595

0.401
  radA Streptococcus pneumoniae Rx1

42.826

93.595

0.401
  radA Streptococcus pneumoniae TIGR4

42.826

93.595

0.401
  radA Streptococcus mitis SK321

44.235

87.81

0.388
  radA Streptococcus mitis NCTC 12261

44

87.81

0.386

Multiple sequence alignment