Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JV59_RS06515 Genome accession   NZ_CP009264
Coordinates   1378107..1379594 (-) Length   495 a.a.
NCBI ID   WP_038511233.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain OCN014     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373107..1384594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JV59_RS06495 (JV59_30685) - 1373109..1374560 (-) 1452 WP_038511226.1 lipopolysaccharide biosynthesis protein -
  JV59_RS06500 (JV59_30690) - 1374571..1375767 (-) 1197 WP_038511228.1 glycosyltransferase -
  JV59_RS06505 (JV59_06470) - 1375760..1376962 (-) 1203 WP_038159125.1 glycosyltransferase -
  JV59_RS06510 (JV59_30695) - 1377062..1378129 (-) 1068 WP_038511231.1 glycosyltransferase family 4 protein -
  JV59_RS06515 (JV59_30700) luxO 1378107..1379594 (-) 1488 WP_038511233.1 sigma-54-dependent transcriptional regulator Regulator
  JV59_RS06520 (JV59_30705) - 1379616..1381916 (-) 2301 WP_038511235.1 response regulator -
  JV59_RS06525 (JV59_30710) - 1381939..1382739 (-) 801 WP_038511238.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  JV59_RS06530 (JV59_30715) - 1382749..1383444 (-) 696 WP_006962356.1 chromosome partitioning ATPase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55136.94 Da        Isoelectric Point: 5.5266

>NTDB_id=127855 JV59_RS06515 WP_038511233.1 1378107..1379594(-) (luxO) [Vibrio coralliilyticus strain OCN014]
MRAKVLLIEDSTSLAVLYKQYVKDEAFDLFHVETGRDAKAFIERNVPQLVILDLKLPDMNGEDILDWINENQVPTSVVVA
TAHGSVDIAVSLLQKGAKDFLEKPIQADRLKTSINLHLQQAKLEHLVEDIEAKFDRNRFHGFIGSCLPMQGVYKIIDSVA
PTTASVFIIGESGTGKEVCAEAIHKESKRNDKPFIAINCGAIPKDLMESEIFGHVKGAFTGATTDRKGAASLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEMKVDVRIICATNRDPLLEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
TTLATHFLKLFAKEDGKKFNGINRDAESLLKHYSWPGNVRQLQNVIRNIVVLNDESKLSVAHLPDQISKSNKSAKPKAAQ
AAIRYEAPVQSSPVESADTALQASTPVIESVNTQSSTPVTIRPMWQVERETIQQAIDFCDGNVLNAAVLLELSPSTVYRK
KQAWEAEEDEQQYAD

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=127855 JV59_RS06515 WP_038511233.1 1378107..1379594(-) (luxO) [Vibrio coralliilyticus strain OCN014]
ATGAGAGCAAAAGTACTACTGATTGAAGACTCCACATCTCTGGCAGTCCTTTACAAACAGTACGTAAAAGATGAAGCGTT
TGACCTGTTTCATGTTGAAACAGGTCGTGATGCCAAAGCATTCATAGAACGAAACGTACCACAACTTGTGATTTTAGATC
TCAAGCTTCCGGACATGAACGGCGAAGATATCCTTGACTGGATCAACGAGAATCAAGTACCAACCTCGGTCGTCGTTGCA
ACCGCACACGGTTCCGTGGATATCGCGGTAAGCTTGCTCCAGAAAGGGGCGAAAGACTTTCTCGAAAAGCCGATTCAGGC
AGACCGCCTCAAAACGTCGATAAATCTCCACTTACAACAAGCTAAACTCGAACACTTAGTCGAAGATATCGAAGCGAAAT
TCGACAGAAATCGCTTCCATGGATTCATCGGCTCTTGTCTACCTATGCAGGGCGTATACAAAATCATCGACTCTGTTGCA
CCGACAACAGCGAGTGTTTTCATCATTGGAGAAAGCGGCACCGGTAAAGAAGTGTGCGCAGAAGCAATTCACAAAGAAAG
TAAACGAAACGATAAACCTTTTATCGCCATCAACTGTGGTGCCATTCCTAAAGATCTTATGGAAAGCGAAATTTTTGGCC
ATGTAAAAGGTGCATTCACAGGGGCAACTACGGACAGAAAAGGCGCGGCATCTTTAGCTCATGGAGGAACGCTCTTCCTT
GACGAGTTATGTGAGATGGAGCTAGAAATGCAGAAGAAACTGCTACGTTTCCTGCAGACAGGTACTTTCACCCCACTCGG
GGGTTCGAAAGAAATGAAGGTCGATGTGCGGATAATCTGCGCTACCAACCGTGACCCATTGCTAGAAGTTGAAGAAGGCC
GATTCCGAGAAGACTTGTACTACCGTGTTCATGTTGTGCCGATTGAGATGCCTCCTTTGAGAGAGCGTGGGAATGACATC
ACAACGCTAGCGACTCATTTCCTTAAGCTGTTCGCTAAAGAAGACGGTAAGAAATTCAACGGTATCAATCGAGATGCTGA
ATCTTTACTCAAGCACTACTCCTGGCCCGGTAATGTGAGACAGCTGCAAAATGTCATTCGCAATATAGTTGTTCTCAACG
ACGAATCAAAGCTCTCTGTTGCTCACCTGCCTGATCAGATTTCAAAAAGTAATAAATCGGCTAAGCCCAAAGCAGCCCAA
GCAGCAATACGCTATGAAGCCCCTGTTCAATCGTCACCAGTAGAATCGGCGGATACGGCATTACAAGCATCTACTCCAGT
GATTGAGAGTGTTAACACACAAAGTTCTACGCCGGTAACAATACGGCCAATGTGGCAGGTAGAGAGAGAAACCATTCAGC
AAGCCATTGATTTTTGTGATGGTAATGTCCTCAACGCAGCGGTATTACTCGAGTTGAGTCCATCAACCGTTTATCGTAAA
AAACAGGCCTGGGAAGCCGAAGAAGATGAGCAGCAATACGCGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Bacterial regulatory protein, Fis family (HTH_8)

(444-480)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.48

97.172

0.481

Multiple sequence alignment