Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   WV34_RS05925 Genome accession   NZ_CP011252
Coordinates   1135686..1139078 (+) Length   1130 a.a.
NCBI ID   WP_088612556.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1130686..1144078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS05915 (WV34_05810) addA 1130746..1134450 (+) 3705 WP_088613839.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  WV34_RS05920 (WV34_05815) sbcD 1134517..1135689 (+) 1173 WP_088612555.1 exonuclease subunit SbcD -
  WV34_RS05925 (WV34_05820) sbcC 1135686..1139078 (+) 3393 WP_088612556.1 exonuclease subunit SbcC Machinery gene
  WV34_RS05930 (WV34_05825) - 1139094..1139393 (+) 300 WP_013351764.1 hypothetical protein -
  WV34_RS05935 (WV34_05830) - 1139434..1139652 (-) 219 WP_013351765.1 spore germination protein -
  WV34_RS05940 (WV34_05835) - 1139692..1140087 (-) 396 WP_014470012.1 spore germination protein GerPE -
  WV34_RS05945 (WV34_05840) - 1140087..1140263 (-) 177 WP_013351767.1 hypothetical protein -
  WV34_RS05950 (WV34_05845) - 1140260..1140880 (-) 621 WP_071347110.1 spore germination protein GerPC -
  WV34_RS05955 (WV34_05850) - 1140915..1141148 (-) 234 WP_014470013.1 spore germination protein GerPB -
  WV34_RS05960 (WV34_05855) - 1141161..1141382 (-) 222 WP_003155135.1 spore germination protein -
  WV34_RS05965 (WV34_05860) - 1141574..1141792 (-) 219 WP_065521725.1 aspartyl-phosphate phosphatase Spo0E family protein -
  WV34_RS05970 (WV34_05865) - 1142009..1142914 (+) 906 WP_088612557.1 fumarylacetoacetate hydrolase family protein -
  WV34_RS05975 (WV34_05870) - 1143008..1143364 (+) 357 WP_013351772.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128250.19 Da        Isoelectric Point: 5.4651

>NTDB_id=126764 WV34_RS05925 WP_088612556.1 1135686..1139078(+) (sbcC) [Bacillus amyloliquefaciens strain MT45]
MKPILLTIKGLHSFREEQTIDFDGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKEEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKLAEQQFHEANERLEAAEKKRVQAK
ERFENHQEIWNLQTERDEYEARQEKLEENRPYITGLTDRLKEAETALALEPYADRYTEAVRRKERAEQEHELSKRKLEAE
TASFTRQNEAYEAWRVHKAEQEPKLVKEEELYQRLSAIEQKLLEAKKEVEKTKAEHGKKEEEYEAASKQLTAVKDRLTRG
QNRQNELKEELKAVQVTADERKKCQTAAQLAAGFQQTQEQITKERTNLTAQLKNMEKLNGESEALSAKAKSEEEDITRAY
QTLQTVYHMVCETERSLKAAAERADKTQTDLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRSRSAHETYSPDTA
VQERLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQNARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVREKVTRLISTYQKTVKQAEQLAERIRYEEKEADRLRHSLEELESLSESRLNQYNESCGDIPLSRIDAWQASIDEKDR
QAEEFEKRIETSIAFLKEHEDEKERLQEKKHQLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLDAVRQELQL
LKSKEQSLFDALQQAQQSLNDAKGRESGSLMSLRDAESALEKAQKDWRGKSKDTGFAEPDQVKKSLLPKERAEEMKREID
EFLDGSKQLSANIRRVTDKLAGRRVTEEEWTASVSLLEQAEAESGTAKEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTMEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=126764 WV34_RS05925 WP_088612556.1 1135686..1139078(+) (sbcC) [Bacillus amyloliquefaciens strain MT45]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGAGAGGAACAGACCATTGACTTTGACGGACTGTCCGG
TGCCGGGGTGTTCGGAATTTTCGGCCCGACGGGAAGCGGAAAGTCGTCGATCCTTGATGCGATGACACTCGCTTTATACG
GAAAAGTGGAGCGTGCCGCAAATAATACGCACGGCATTCTGAACCATGCCGAAGATCAGCTCGCCGTCTCTTTTACATTC
GCGCTTCAATCCGGCCACAGGGTGTCCTACAAAGTAGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTGAAAACCGC
CCTCTGCCGCTTGATTGAAATCAAAGAGGAACAAACCGTGCTTGCCGATAAAGCGAATGAAGTGAACAAAAAGGTGGAAG
AGCTTCTTGGCCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTCCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTG
AAAGGCGCGGAAAGAAGACATATGCTGCAGCGCCTTTTTAATCTGGAACAGTACGGTGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCAGCGAAAAAAAATGAGATGCTGGCCGAACAATCCGGCCTCGGAGACGCGGGGGAAGACG
CGCTGAAGCTGGCTGAACAGCAGTTTCACGAAGCGAATGAACGGCTTGAAGCGGCTGAGAAGAAACGGGTTCAAGCAAAA
GAACGTTTTGAGAATCACCAGGAGATTTGGAACTTGCAGACAGAGAGAGACGAATATGAGGCGCGGCAGGAAAAGCTTGA
GGAAAACCGCCCGTATATCACGGGTTTGACTGACCGTCTTAAAGAAGCGGAAACCGCTCTCGCTCTTGAACCGTATGCAG
ATCGCTACACGGAAGCCGTCCGCCGGAAGGAGCGCGCCGAGCAGGAGCACGAACTGTCCAAACGGAAATTAGAGGCGGAA
ACCGCTTCATTTACCCGGCAAAATGAAGCCTATGAAGCGTGGCGGGTTCATAAGGCTGAACAAGAGCCGAAGCTTGTCAA
GGAAGAAGAGCTGTATCAAAGGCTGTCAGCCATTGAACAAAAGCTGCTTGAAGCAAAAAAAGAAGTGGAAAAAACAAAGG
CGGAGCACGGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAGCAGCTGACCGCAGTGAAAGACCGCCTGACTCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTTCAAGTGACCGCTGATGAACGGAAAAAATGCCAGACCGC
CGCACAGCTGGCAGCCGGCTTTCAGCAGACACAGGAACAAATCACGAAAGAACGGACCAATCTGACAGCCCAGTTGAAAA
ATATGGAGAAGCTGAACGGAGAAAGCGAGGCGCTCAGCGCAAAGGCGAAATCGGAAGAAGAGGACATTACGCGCGCTTAT
CAAACACTTCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCGGACAAAAC
GCAAACCGACCTGCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTAATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCAACGCAGCATGACCGTTCGCGCTCCGCTCATGAAACATATTCGCCCGATACGGCT
GTACAGGAACGTTTGCAGCAGGTTGAAGCGCTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACGGCCAAGGT
TGCATTAGAAGAGCAGTCGGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAACGCCCGGGTCCCGGAGCTGGAAGCCG
CTTCTTCTATCAGCGGCCGCCCGCTTGATGAAGCGTTCAGCGCCGTCCGCCTGGAGTGGAAACAAATGAAACAGGATATG
CTGTCGGTAAGAGAGAAGGTCACGAGACTGATCAGTACCTATCAAAAGACGGTGAAACAAGCTGAGCAGCTGGCCGAACG
AATCCGCTATGAGGAAAAAGAAGCAGACCGCCTCAGACATTCATTAGAAGAGCTCGAATCGCTGTCAGAAAGCCGCTTGA
ATCAGTACAACGAATCCTGCGGGGATATTCCGTTAAGCCGGATTGATGCCTGGCAGGCTTCGATAGACGAAAAGGACAGG
CAGGCAGAGGAATTCGAGAAGCGCATTGAAACAAGCATCGCATTCCTCAAGGAACATGAAGATGAGAAAGAACGGCTGCA
GGAGAAGAAGCATCAGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCAGAGCGCCTGCAGCAGGTCATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCCATTTCTGCAAAGCTTGACGCGGTGCGGCAGGAATTACAGCTC
TTAAAATCGAAAGAACAGTCCTTATTTGATGCGCTGCAGCAGGCTCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
CGGGAGCCTCATGTCACTGCGGGACGCTGAGTCCGCCCTTGAGAAAGCGCAAAAGGACTGGCGCGGGAAATCAAAAGACA
CCGGGTTTGCCGAGCCGGATCAAGTCAAAAAAAGCCTGCTTCCGAAAGAGCGGGCCGAGGAAATGAAAAGAGAAATTGAT
GAGTTTCTGGACGGCTCAAAGCAGCTTTCGGCAAATATCCGCCGTGTCACTGATAAATTAGCCGGCCGCCGGGTAACGGA
AGAAGAATGGACAGCATCGGTTTCTCTGCTGGAGCAGGCAGAGGCTGAGTCAGGCACCGCCAAGGAGGAAAAAGGAGCCC
AGGCAAAAGCCTTTGCGGTGATGCAAAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAGGAACAGCTGGA
AAGCGTGGCCCGAGACGCCTCTGCCCGGCTTGGAGCGCTGACAAGACAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GCTTTGTCATGCGCGATGACGCGAACGGCGGCGTCAAACGCCCCGTATCAAGCCTTTCCGGAGGTGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCTCTGTCCGCCCAGATTCAGCTGCGGGGGCAATATCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACGCTTGACCAAGGGCTTTTAGACACCGTTGTCACAGCGCTGGAAAAGCTGCAATCGGATAATTTGTCCG
TCGGGGTGATCAGCCATGTGCAGGAGCTCAGAGCGCGGCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGA
AAAGGCACCCGGGTCACAATGGAGATCATGTAG

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)

AAA domain (AAA_23)

(6-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.336

100

0.643