Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AMD19_RS16145 Genome accession   NZ_CP008992
Coordinates   3621118..3621519 (-) Length   133 a.a.
NCBI ID   WP_005913706.1    Uniprot ID   A0AAI7ZH35
Organism   Xanthomonas citri subsp. citri UI6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3616118..3626519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD19_RS16130 (J158_03261) - 3618132..3620168 (-) 2037 WP_003482481.1 methyl-accepting chemotaxis protein -
  AMD19_RS16135 (J158_03262) - 3620208..3620738 (-) 531 WP_015463484.1 chemotaxis protein CheW -
  AMD19_RS16140 (J158_03263) - 3620738..3621100 (-) 363 WP_005913708.1 response regulator -
  AMD19_RS16145 (J158_03264) pilG 3621118..3621519 (-) 402 WP_005913706.1 twitching motility response regulator PilG Regulator
  AMD19_RS16150 (J158_03265) gshB 3621756..3622706 (+) 951 WP_011052038.1 glutathione synthase -
  AMD19_RS16155 (J158_03266) - 3622703..3623578 (+) 876 WP_005913700.1 TonB family protein -
  AMD19_RS16160 (J158_03267) - 3623652..3624569 (-) 918 WP_011052039.1 ADP-ribosylglycohydrolase family protein -
  AMD19_RS16165 (J158_03268) tsaB 3624566..3625285 (-) 720 WP_003482499.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14667.03 Da        Isoelectric Point: 6.9539

>NTDB_id=125973 AMD19_RS16145 WP_005913706.1 3621118..3621519(-) (pilG) [Xanthomonas citri subsp. citri UI6]
MSENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=125973 AMD19_RS16145 WP_005913706.1 3621118..3621519(-) (pilG) [Xanthomonas citri subsp. citri UI6]
ATGAGTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTCATCGATGACTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTCGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTGATCATGTTGTCGTCCAAGGACGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTACTGAGCGCGATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment