Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BMMGA3_RS11480 Genome accession   NZ_CP007739
Coordinates   2366622..2367377 (-) Length   251 a.a.
NCBI ID   WP_004435792.1    Uniprot ID   I3EAM0
Organism   Bacillus methanolicus MGA3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2361622..2372377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMMGA3_RS11465 (BMMGA3_11910) - 2363258..2364058 (-) 801 WP_034669389.1 pyruvate, water dikinase regulatory protein -
  BMMGA3_RS11470 (BMMGA3_11915) - 2364105..2364737 (-) 633 WP_004435788.1 helix-turn-helix transcriptional regulator -
  BMMGA3_RS11475 (BMMGA3_11920) - 2364948..2366330 (-) 1383 WP_004435791.1 glycine--tRNA ligase -
  BMMGA3_RS11480 (BMMGA3_11925) recO 2366622..2367377 (-) 756 WP_004435792.1 DNA repair protein RecO Machinery gene
  BMMGA3_RS17475 (BMMGA3_11930) - 2367409..2367552 (-) 144 WP_004435793.1 YqzL family protein -
  BMMGA3_RS11485 (BMMGA3_11935) era 2367712..2368632 (-) 921 WP_004435794.1 GTPase Era -
  BMMGA3_RS11490 (BMMGA3_11940) - 2368625..2369017 (-) 393 WP_034669390.1 cytidine deaminase -
  BMMGA3_RS11495 (BMMGA3_11945) - 2369414..2369818 (-) 405 WP_004435796.1 diacylglycerol kinase family protein -
  BMMGA3_RS11500 (BMMGA3_11950) ybeY 2369796..2370266 (-) 471 WP_004435798.1 rRNA maturation RNase YbeY -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28698.31 Da        Isoelectric Point: 8.9456

>NTDB_id=123006 BMMGA3_RS11480 WP_004435792.1 2366622..2367377(-) (recO) [Bacillus methanolicus MGA3]
MLQKCEGIVLRTTDYGEANKVVTLYTREWGKIGVMARGAKKANSRLSAVTQIFTYGYFLIQKGSGLGSLQQGEILSSMRL
IREDIFLTAYASYILELTDKSTEEKKSNPYHFELLLQILKFMNEGYDLDILTNIYEMKMLNSLGLYPELNHCTICGNTDG
HFSFSIREGGFICHRCIEKDPYALKISSATAKLLRLFYYFDLSRLGNISVKPDTKAELKKVISAYYDEYSGLKLKTKKFL
NQIDKMRDLLS

Nucleotide


Download         Length: 756 bp        

>NTDB_id=123006 BMMGA3_RS11480 WP_004435792.1 2366622..2367377(-) (recO) [Bacillus methanolicus MGA3]
ATGCTTCAAAAATGTGAAGGCATCGTCTTAAGGACAACAGATTATGGTGAAGCAAATAAAGTTGTTACATTATATACCCG
TGAGTGGGGAAAGATTGGTGTGATGGCGCGAGGGGCAAAAAAGGCGAATAGCCGCCTTTCTGCCGTCACCCAGATTTTTA
CATATGGATACTTTTTAATTCAAAAAGGCAGCGGTCTTGGCAGCTTGCAGCAAGGTGAAATATTATCCTCAATGCGTTTG
ATTCGAGAGGATATTTTTTTAACTGCATATGCGAGTTACATTTTGGAACTGACGGATAAAAGCACTGAGGAAAAAAAATC
AAATCCTTATCATTTTGAATTGCTGCTTCAAATTTTGAAATTTATGAATGAAGGGTATGACCTCGATATTTTAACGAATA
TATATGAAATGAAAATGCTCAATTCTTTGGGGCTCTATCCTGAATTAAATCACTGTACCATTTGCGGCAACACAGATGGG
CATTTTTCTTTTTCAATCCGGGAAGGGGGATTTATTTGCCACCGGTGTATTGAAAAAGATCCTTATGCGCTTAAAATTTC
CTCTGCAACTGCTAAATTACTGAGGCTTTTCTATTATTTTGACCTTTCAAGGCTTGGAAATATTTCAGTTAAACCGGATA
CAAAAGCGGAATTGAAAAAAGTTATTTCTGCTTATTATGATGAATACTCAGGTTTGAAATTAAAGACGAAGAAATTCTTG
AATCAAATTGATAAAATGCGTGATTTGCTGTCATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3EAM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

68.4

99.602

0.681

Multiple sequence alignment