Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NELON_RS00990 Genome accession   NZ_CP007726
Coordinates   195792..197009 (+) Length   405 a.a.
NCBI ID   WP_003775241.1    Uniprot ID   D4DUZ6
Organism   Neisseria elongata subsp. glycolytica ATCC 29315     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 190792..202009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NELON_RS00980 (NELON_01035) lysS 191952..193463 (+) 1512 WP_003775235.1 lysine--tRNA ligase -
  NELON_RS00985 (NELON_01040) - 193817..195667 (+) 1851 WP_003775239.1 ABC transporter ATP-binding protein -
  NELON_RS00990 (NELON_01045) dprA 195792..197009 (+) 1218 WP_003775241.1 DNA-processing protein DprA Machinery gene
  NELON_RS00995 (NELON_01050) - 197049..197504 (+) 456 WP_003775243.1 DUF494 domain-containing protein -
  NELON_RS01000 (NELON_01055) topA 197623..199929 (+) 2307 WP_003775245.1 type I DNA topoisomerase -
  NELON_RS01005 (NELON_01060) rsmD 200068..200637 (+) 570 WP_041961234.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NELON_RS11395 - 200747..200998 (+) 252 WP_049249225.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43615.59 Da        Isoelectric Point: 5.8412

>NTDB_id=122897 NELON_RS00990 WP_003775241.1 195792..197009(+) (dprA) [Neisseria elongata subsp. glycolytica ATCC 29315]
MTTEQERHYWLRLALVPHIGAESFLQLIRHFGTATAAWQADAAAVRQVLVRKAAQEAWANRRGEAEQAAEAAEKWSEQEN
CRLLLLCDEDFPAMLSEGITPPPMLFVRGNVELLHRPSVAIVGSRHATPQALRIAHDFGRSLSERGISVVSGMAAGIDAA
AHRGALAAGGGTVAFWGTGIDRIYPSSNRELAYELGEKGAIVSEFPLGTRPLAGNFPRRNRLIAALSQAVLVVEAALESG
SLITARLAGEMGREVLAVPGSIDNPHSKGCHKLIKEGAKLTESLEDILQECPQLLPESAASSYSIYKETPVRRKISVSLA
AETDEDRKEVVENKEYRPSETPLPPATASNDAAALLEKMGYGPIHPDTLAEQLNKNAADIYAALLELELGGLVAAMPGGR
YQRIG

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=122897 NELON_RS00990 WP_003775241.1 195792..197009(+) (dprA) [Neisseria elongata subsp. glycolytica ATCC 29315]
ATGACTACTGAACAAGAACGACATTACTGGCTGCGGCTGGCACTGGTGCCGCACATCGGCGCGGAAAGCTTCCTGCAGCT
TATCCGCCATTTCGGCACGGCCACCGCCGCGTGGCAGGCGGATGCCGCAGCCGTACGGCAAGTACTGGTGCGCAAAGCCG
CGCAGGAAGCATGGGCAAACCGGCGCGGAGAAGCCGAACAGGCCGCCGAAGCCGCCGAAAAATGGTCGGAACAGGAAAAC
TGCCGCCTGCTGCTGTTGTGCGACGAAGACTTCCCCGCCATGCTGTCCGAAGGCATCACCCCGCCGCCGATGCTGTTCGT
CCGCGGCAACGTCGAATTGTTGCACCGCCCGTCCGTGGCCATAGTCGGCAGCCGCCACGCTACCCCGCAGGCACTGCGTA
TCGCCCACGACTTCGGCCGCAGCCTGTCCGAGCGCGGGATTTCCGTCGTTTCGGGCATGGCCGCCGGCATCGATGCGGCC
GCCCATCGCGGCGCATTGGCGGCCGGCGGCGGCACCGTGGCCTTTTGGGGGACGGGCATAGACCGCATCTATCCGTCGTC
CAACCGCGAACTGGCCTATGAACTCGGCGAAAAAGGTGCGATCGTATCCGAATTTCCGCTCGGCACCCGCCCGCTGGCAG
GCAACTTCCCGCGCCGCAACCGCCTGATAGCCGCACTCTCGCAGGCCGTATTGGTCGTTGAAGCCGCCTTGGAATCGGGT
TCGCTGATTACCGCGCGGCTGGCGGGCGAAATGGGGCGCGAGGTGCTGGCCGTTCCCGGCTCGATAGACAACCCCCACAG
CAAAGGCTGCCACAAACTGATTAAAGAGGGCGCGAAACTGACCGAATCGCTGGAAGACATCCTGCAGGAATGCCCGCAAC
TGTTGCCAGAAAGTGCCGCTTCATCATATTCTATATATAAGGAAACGCCCGTACGGCGGAAAATTTCCGTCAGCCTTGCG
GCAGAAACGGACGAAGATCGGAAAGAAGTTGTTGAAAACAAAGAATACAGGCCGTCTGAAACCCCGCTTCCCCCGGCGAC
GGCCTCAAACGATGCCGCCGCCCTGCTTGAGAAAATGGGCTACGGCCCCATACATCCCGACACTTTGGCCGAACAGCTGA
ACAAAAACGCGGCCGACATTTACGCCGCCCTGTTGGAATTGGAACTGGGCGGACTCGTTGCCGCCATGCCGGGCGGGCGT
TACCAACGCATCGGATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(340-399)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DUZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

64.619

100

0.649
  dprA Neisseria gonorrhoeae strain FA1090

64.619

100

0.649
  dprA Neisseria meningitidis strain C311

64.532

100

0.647
  dprA Neisseria meningitidis MC58

64.532

100

0.647
  dprA Vibrio cholerae strain A1552

37.871

99.753

0.378
  dprA Glaesserella parasuis strain SC1401

38.01

96.79

0.368

Multiple sequence alignment