Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NELON_RS00790 Genome accession   NZ_CP007726
Coordinates   150966..151295 (-) Length   109 a.a.
NCBI ID   WP_003775734.1    Uniprot ID   D4DVN0
Organism   Neisseria elongata subsp. glycolytica ATCC 29315     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145966..156295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NELON_RS00780 (NELON_00830) mnmE 148410..149774 (+) 1365 WP_003775385.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  NELON_RS00785 (NELON_00835) murU 149918..150607 (+) 690 WP_003775384.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  NELON_RS00790 (NELON_00840) comE 150966..151295 (-) 330 WP_003775734.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11178.03 Da        Isoelectric Point: 10.4122

>NTDB_id=122895 NELON_RS00790 WP_003775734.1 150966..151295(-) (comE) [Neisseria elongata subsp. glycolytica ATCC 29315]
MKKALFGLLSYAVTALALAAVNINTATVEELKALPGIGPAKAQAIVDYRKENGNFKSVEDLKKVKGIGEGIFGKLKDEAT
VGTAAPAKTTKPAAEKPAAQPAAGKNTAK

Nucleotide


Download         Length: 330 bp        

>NTDB_id=122895 NELON_RS00790 WP_003775734.1 150966..151295(-) (comE) [Neisseria elongata subsp. glycolytica ATCC 29315]
ATGAAAAAGGCTTTGTTCGGTTTGTTGTCTTATGCGGTTACGGCCTTGGCTTTGGCGGCCGTCAATATCAATACAGCCAC
GGTTGAGGAGTTGAAGGCTTTGCCCGGGATCGGTCCGGCAAAGGCTCAGGCCATTGTGGATTACCGTAAGGAAAACGGTA
ATTTCAAATCGGTGGAGGATTTGAAGAAGGTGAAGGGCATCGGCGAGGGTATCTTCGGTAAGTTGAAGGATGAGGCAACG
GTCGGTACCGCTGCGCCGGCTAAAACGACCAAACCCGCAGCCGAAAAACCTGCCGCCCAACCCGCAGCAGGGAAAAATAC
GGCTAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DVN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.609

84.404

0.486
  comE Neisseria gonorrhoeae MS11

57.609

84.404

0.486
  comE Neisseria gonorrhoeae MS11

57.609

84.404

0.486
  comE Neisseria gonorrhoeae MS11

57.609

84.404

0.486
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.494

74.312

0.45

Multiple sequence alignment