Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DK51_RS01795 Genome accession   NZ_CP007682
Coordinates   377080..377586 (+) Length   168 a.a.
NCBI ID   WP_002967690.1    Uniprot ID   A0A7L9MC56
Organism   Brucella abortus strain BER     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 372080..382586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK51_RS01785 (DK51_360) - 372795..373070 (+) 276 WP_002964234.1 HU family DNA-binding protein -
  DK51_RS01790 (DK51_361) uvrA 373257..376181 (-) 2925 WP_002964233.1 excinuclease ABC subunit UvrA -
  DK51_RS15930 (DK51_362) - 376312..376512 (-) 201 WP_002964232.1 hypothetical protein -
  DK51_RS01795 (DK51_364) ssb 377080..377586 (+) 507 WP_002967690.1 single-stranded DNA-binding protein Machinery gene
  DK51_RS15935 (DK51_363) - 377490..377690 (-) 201 WP_006121020.1 hypothetical protein -
  DK51_RS01800 (DK51_365) - 377742..378143 (-) 402 WP_006121018.1 hypothetical protein -
  DK51_RS01805 (DK51_366) phnF 378286..379047 (-) 762 WP_002966839.1 phosphonate metabolism transcriptional regulator PhnF -
  DK51_RS01810 (DK51_367) phnN 379234..379812 (+) 579 WP_006103407.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  DK51_RS01815 (DK51_368) - 379903..380532 (-) 630 WP_002967687.1 MarC family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18371.15 Da        Isoelectric Point: 5.3476

>NTDB_id=122461 DK51_RS01795 WP_002967690.1 377080..377586(+) (ssb) [Brucella abortus strain BER]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=122461 DK51_RS01795 WP_002967690.1 377080..377586(+) (ssb) [Brucella abortus strain BER]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.947

100

0.554
  ssb Vibrio cholerae strain A1552

49.711

100

0.512
  ssb Neisseria meningitidis MC58

38.547

100

0.411
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.405

Multiple sequence alignment