Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MA06_RS15075 Genome accession   NZ_CP007626
Coordinates   2509491..2509775 (-) Length   94 a.a.
NCBI ID   WP_003194210.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain 219298     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2504491..2514775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS15040 (DJ92_2621) tmk 2504645..2505271 (+) 627 WP_003194196.1 dTMP kinase -
  MA06_RS15045 (DJ92_2622) holB 2505307..2506290 (+) 984 WP_018783058.1 DNA polymerase III subunit delta' -
  MA06_RS15050 (DJ92_2623) - 2506296..2507123 (+) 828 WP_003194202.1 stage 0 sporulation family protein -
  MA06_RS15055 (DJ92_2624) yabA 2507138..2507488 (+) 351 WP_016116893.1 DNA replication initiation control protein YabA -
  MA06_RS15060 (DJ92_2625) - 2507609..2508349 (+) 741 WP_006093070.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MA06_RS15065 (DJ92_2626) - 2508336..2508626 (+) 291 WP_018783059.1 GIY-YIG nuclease family protein -
  MA06_RS15070 (DJ92_2627) rsmI 2508595..2509470 (+) 876 WP_018783060.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MA06_RS15075 (DJ92_2628) abrB 2509491..2509775 (-) 285 WP_003194210.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MA06_RS15080 (DJ92_2629) metG 2510139..2512121 (+) 1983 WP_018783061.1 methionine--tRNA ligase -
  MA06_RS15085 (DJ92_2630) - 2512299..2513066 (+) 768 WP_018783062.1 TatD family hydrolase -
  MA06_RS15090 (DJ92_2631) rnmV 2513350..2513907 (+) 558 WP_018767333.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10500.25 Da        Isoelectric Point: 5.1969

>NTDB_id=121771 MA06_RS15075 WP_003194210.1 2509491..2509775(-) (abrB) [Bacillus pseudomycoides strain 219298]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQQYIQAVK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=121771 MA06_RS15075 WP_003194210.1 2509491..2509775(-) (abrB) [Bacillus pseudomycoides strain 219298]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGCCGTGTTGTAATTCCGATTGAATTACGTCGTACATTAGG
TATTGCTGAAAAGGATGCTCTTGAAATTTACGTTGATGACGAAAAAATCATCCTAAAAAAATATAAGCCTAACATGACTT
GCCAAGTAACTGGTGAAGTGTCTGATGGTAACCTTTCTTTAGCCGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAA
CAGATCTTAAACGAACTTCAACAATATATTCAAGCAGTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

86.17

100

0.862

Multiple sequence alignment