Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CH99_RS06640 Genome accession   NZ_CP007592
Coordinates   1366464..1367093 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O157:H16 strain Santai     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1361464..1372093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH99_RS06615 ycbZ 1361848..1363608 (-) 1761 WP_021556661.1 Lon protease family protein -
  CH99_RS06620 matP 1363794..1364246 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CH99_RS06625 ompA 1364324..1365379 (-) 1056 WP_000750414.1 porin OmpA -
  CH99_RS06635 sulA 1365736..1366245 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  CH99_RS06640 sxy/tfoX 1366464..1367093 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CH99_RS06645 yccS 1367056..1369218 (-) 2163 WP_000323868.1 YccS family putative transporter -
  CH99_RS06650 yccF 1369228..1369674 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CH99_RS06655 helD 1369797..1371851 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=121391 CH99_RS06640 WP_000839153.1 1366464..1367093(+) (sxy/tfoX) [Escherichia coli O157:H16 strain Santai]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=121391 CH99_RS06640 WP_000839153.1 1366464..1367093(+) (sxy/tfoX) [Escherichia coli O157:H16 strain Santai]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment