Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SD90_RS04350 Genome accession   NZ_CP010450
Coordinates   873873..874943 (-) Length   356 a.a.
NCBI ID   WP_032462913.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS638     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 868873..879943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD90_RS04330 (SD90_04340) citX 869454..870032 (+) 579 WP_011054513.1 citrate lyase holo-[acyl-carrier protein] synthase -
  SD90_RS04335 (SD90_04345) - 870047..871441 (+) 1395 WP_032462915.1 oxaloacetate decarboxylase subunit alpha -
  SD90_RS04340 (SD90_04350) citC 871551..872603 (-) 1053 WP_002991776.1 [citrate (pro-3S)-lyase] ligase -
  SD90_RS04345 (SD90_04355) - 872692..873174 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  SD90_RS04350 (SD90_04360) xerS 873873..874943 (-) 1071 WP_032462913.1 tyrosine recombinase XerS Machinery gene
  SD90_RS04355 (SD90_04365) - 875412..876110 (+) 699 WP_002993300.1 XRE family transcriptional regulator -
  SD90_RS04360 (SD90_04370) ffh 876245..877807 (-) 1563 WP_002993302.1 signal recognition particle protein -
  SD90_RS04365 (SD90_04375) - 877822..878154 (-) 333 WP_002989745.1 putative DNA-binding protein -
  SD90_RS04370 (SD90_04380) - 878252..878950 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41470.63 Da        Isoelectric Point: 9.6864

>NTDB_id=121391 SD90_RS04350 WP_032462913.1 873873..874943(-) (xerS) [Streptococcus pyogenes strain NGAS638]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLKSYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=121391 SD90_RS04350 WP_032462913.1 873873..874943(-) (xerS) [Streptococcus pyogenes strain NGAS638]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGTGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGAAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803

Multiple sequence alignment