Detailed information NTG0120380

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: A406_RS00610
• Genome accession: NZ_CP007526
• Coordinates: 106697..107179 (+)
• Length: 160 a.a.
• NCBI ID: WP_023546281.1
• Uniprot ID: -
• Organism: Listeria monocytogenes serotype 4b str. 81-0592
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 101697..112179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A406_RS00565 (A406_0113)	-	102409..103323 (+)	915	WP_023546298.1	DnaD domain-containing protein	-
A406_RS00570 (A406_0114)	-	103371..103901 (+)	531	WP_041197739.1	hypothetical protein	-
A406_RS15175 (A406_0115)	-	103912..104079 (+)	168	WP_023546294.1	hypothetical protein	-
A406_RS00575 (A406_0116)	-	104085..104363 (+)	279	WP_041197735.1	hypothetical protein	-
A406_RS00580 (A406_0117)	-	104360..104590 (+)	231	WP_023546290.1	hypothetical protein	-
A406_RS00585 (A406_0118)	-	104593..105162 (+)	570	WP_023546288.1	DUF1642 domain-containing protein	-
A406_RS00590 (A406_0119)	-	105159..105347 (+)	189	WP_023546287.1	hypothetical protein	-
A406_RS15140	-	105344..105520 (+)	177	WP_015987084.1	hypothetical protein	-
A406_RS00595 (A406_0120)	-	105507..105797 (+)	291	Protein_123	YopX family protein	-
A406_RS15180 (A406_0121)	-	105894..106064 (+)	171	WP_023546284.1	hypothetical protein	-
A406_RS00600 (A406_0122)	-	106064..106348 (+)	285	WP_023546283.1	DUF7446 family protein	-
A406_RS00605 (A406_0123)	-	106345..106617 (+)	273	WP_023546282.1	hypothetical protein	-
A406_RS00610 (A406_0124)	ssbA	106697..107179 (+)	483	WP_023546281.1	single-stranded DNA-binding protein	Machinery gene
A406_RS00615	-	107198..107380 (+)	183	WP_023546280.1	hypothetical protein	-
A406_RS00620 (A406_0125)	-	107325..107729 (+)	405	WP_041197734.1	DUF1064 domain-containing protein	-
A406_RS00625 (A406_0126)	-	107733..108119 (+)	387	WP_023546277.1	DUF2481 family protein	-
A406_RS00630 (A406_0127)	-	108140..108295 (+)	156	WP_023546275.1	hypothetical protein	-
A406_RS00635 (A406_0128)	-	108383..108955 (+)	573	WP_023546273.1	sigma-70 family RNA polymerase sigma factor	-
A406_RS00640 (A406_0129)	-	109166..109909 (+)	744	WP_232463304.1	hypothetical protein	-
A406_RS00645 (A406_0130)	-	109975..110517 (+)	543	WP_023546270.1	terminase small subunit	-
A406_RS00650 (A406_0131)	-	110486..111817 (+)	1332	WP_023546268.1	PBSX family phage terminase large subunit	-

Sequence

Protein

• Length: 160 a.a.
• Molecular weight: 17930.73 Da
• Isoelectric Point: 4.8280

>NTDB_id=120380 A406_RS00610 WP_023546281.1 106697..107179(+) (ssbA) [Listeria monocytogenes serotype 4b str. 81-0592]
MMNRVVLVGRLTKDPELRYTPASVAVATFTLAVNRTFTNQNGEREADFIQCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAETVQFLEPKNNNAEGATSNNYQNEANYSNNNKTSSYRADTSQKSDSFASEGKPFDINEDDLPF

Nucleotide

• Length: 483 bp

>NTDB_id=120380 A406_RS00610 WP_023546281.1 106697..107179(+) (ssbA) [Listeria monocytogenes serotype 4b str. 81-0592]
ATGATGAATCGTGTAGTGCTTGTAGGACGATTAACTAAAGACCCTGAATTACGTTACACTCCAGCTAGTGTGGCCGTTGC
GACTTTTACATTAGCTGTAAATAGAACATTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGTATGGCAGGCGTTGATGGACGCATACAGACTCGA
AATTATGAAGATAACGACGGTAAACGTGTTTTTGTTACTGAAGTAGTTGCTGAAACAGTTCAATTCTTAGAGCCTAAAAA
TAACAATGCAGAAGGCGCTACATCGAATAATTATCAAAACGAGGCTAATTATTCAAATAACAATAAAACAAGCTCATATC
GAGCGGATACGAGCCAGAAGAGTGATTCATTTGCAAGTGAAGGTAAGCCGTTTGATATTAACGAAGATGATTTGCCATTT
TAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.372	100	0.681
ssb	Latilactobacillus sakei subsp. sakei 23K	52.353	100	0.556
ssbB	Bacillus subtilis subsp. subtilis str. 168	62.264	66.25	0.412