Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | RU84_RS03240 | Genome accession | NZ_CP010397 |
| Coordinates | 661857..662372 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain 6200 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 656857..667372
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RU84_RS03215 (RU84_03215) | - | 657403..659046 (+) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
| RU84_RS03220 (RU84_03220) | - | 659039..659524 (+) | 486 | WP_000935252.1 | DUF934 domain-containing protein | - |
| RU84_RS03225 (RU84_03225) | - | 659607..659960 (+) | 354 | WP_000457783.1 | DMT family transporter | - |
| RU84_RS03230 (RU84_03230) | - | 660003..660446 (-) | 444 | WP_001176580.1 | VOC family protein | - |
| RU84_RS03235 (RU84_03235) | - | 660573..661748 (-) | 1176 | WP_029424634.1 | thiolase family protein | - |
| RU84_RS03240 (RU84_03240) | fimT | 661857..662372 (-) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| RU84_RS03245 (RU84_03245) | omp38 | 662754..663824 (+) | 1071 | WP_000777880.1 | outer membrane protein Omp38 | - |
| RU84_RS20135 (RU84_03250) | - | 663949..664107 (-) | 159 | WP_000692859.1 | hypothetical protein | - |
| RU84_RS03255 (RU84_03255) | - | 664111..665316 (-) | 1206 | WP_000512696.1 | RtcB family protein | - |
| RU84_RS03260 (RU84_03260) | - | 665593..667053 (-) | 1461 | WP_000004971.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=120380 RU84_RS03240 WP_000477151.1 661857..662372(-) (fimT) [Acinetobacter baumannii strain 6200]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=120380 RU84_RS03240 WP_000477151.1 661857..662372(-) (fimT) [Acinetobacter baumannii strain 6200]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTACGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTACGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |