Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | A405_RS00580 | Genome accession | NZ_CP007525 |
| Coordinates | 102380..102862 (+) | Length | 160 a.a. |
| NCBI ID | WP_023546281.1 | Uniprot ID | - |
| Organism | Listeria monocytogenes serotype 4b str. 81-0558 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 97380..107862
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A405_RS00535 (A405_0107) | - | 98092..99006 (+) | 915 | WP_023546298.1 | DnaD domain-containing protein | - |
| A405_RS00540 (A405_0108) | - | 99054..99584 (+) | 531 | WP_041197739.1 | hypothetical protein | - |
| A405_RS15135 (A405_0109) | - | 99595..99762 (+) | 168 | WP_023546294.1 | hypothetical protein | - |
| A405_RS00545 (A405_0110) | - | 99768..100046 (+) | 279 | WP_041197735.1 | hypothetical protein | - |
| A405_RS00550 (A405_0111) | - | 100043..100273 (+) | 231 | WP_023546290.1 | hypothetical protein | - |
| A405_RS00555 (A405_0112) | - | 100276..100845 (+) | 570 | WP_023546288.1 | DUF1642 domain-containing protein | - |
| A405_RS00560 (A405_0113) | - | 100842..101030 (+) | 189 | WP_023546287.1 | hypothetical protein | - |
| A405_RS15105 | - | 101027..101203 (+) | 177 | WP_015987084.1 | hypothetical protein | - |
| A405_RS00565 (A405_0114) | - | 101190..101480 (+) | 291 | Protein_115 | YopX family protein | - |
| A405_RS15140 (A405_0115) | - | 101577..101747 (+) | 171 | WP_023546284.1 | hypothetical protein | - |
| A405_RS00570 (A405_0116) | - | 101747..102031 (+) | 285 | WP_023546283.1 | DUF7446 family protein | - |
| A405_RS00575 (A405_0117) | - | 102028..102300 (+) | 273 | WP_023546282.1 | hypothetical protein | - |
| A405_RS00580 (A405_0118) | ssbA | 102380..102862 (+) | 483 | WP_023546281.1 | single-stranded DNA-binding protein | Machinery gene |
| A405_RS00585 | - | 102881..103063 (+) | 183 | WP_023546280.1 | hypothetical protein | - |
| A405_RS00590 (A405_0119) | - | 103008..103412 (+) | 405 | WP_041197734.1 | DUF1064 domain-containing protein | - |
| A405_RS00595 (A405_0120) | - | 103416..103802 (+) | 387 | WP_023546277.1 | DUF2481 family protein | - |
| A405_RS00600 (A405_0121) | - | 103823..103978 (+) | 156 | WP_023546275.1 | hypothetical protein | - |
| A405_RS00605 (A405_0122) | - | 104066..104638 (+) | 573 | WP_023546273.1 | sigma-70 family RNA polymerase sigma factor | - |
| A405_RS00610 (A405_0123) | - | 104849..105592 (+) | 744 | WP_232463304.1 | hypothetical protein | - |
| A405_RS00615 (A405_0124) | - | 105658..106200 (+) | 543 | WP_023546270.1 | terminase small subunit | - |
| A405_RS00620 (A405_0125) | - | 106169..107500 (+) | 1332 | WP_023546268.1 | PBSX family phage terminase large subunit | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17930.73 Da Isoelectric Point: 4.8280
>NTDB_id=120340 A405_RS00580 WP_023546281.1 102380..102862(+) (ssbA) [Listeria monocytogenes serotype 4b str. 81-0558]
MMNRVVLVGRLTKDPELRYTPASVAVATFTLAVNRTFTNQNGEREADFIQCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAETVQFLEPKNNNAEGATSNNYQNEANYSNNNKTSSYRADTSQKSDSFASEGKPFDINEDDLPF
MMNRVVLVGRLTKDPELRYTPASVAVATFTLAVNRTFTNQNGEREADFIQCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAETVQFLEPKNNNAEGATSNNYQNEANYSNNNKTSSYRADTSQKSDSFASEGKPFDINEDDLPF
Nucleotide
Download Length: 483 bp
>NTDB_id=120340 A405_RS00580 WP_023546281.1 102380..102862(+) (ssbA) [Listeria monocytogenes serotype 4b str. 81-0558]
ATGATGAATCGTGTAGTGCTTGTAGGACGATTAACTAAAGACCCTGAATTACGTTACACTCCAGCTAGTGTGGCCGTTGC
GACTTTTACATTAGCTGTAAATAGAACATTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGTATGGCAGGCGTTGATGGACGCATACAGACTCGA
AATTATGAAGATAACGACGGTAAACGTGTTTTTGTTACTGAAGTAGTTGCTGAAACAGTTCAATTCTTAGAGCCTAAAAA
TAACAATGCAGAAGGCGCTACATCGAATAATTATCAAAACGAGGCTAATTATTCAAATAACAATAAAACAAGCTCATATC
GAGCGGATACGAGCCAGAAGAGTGATTCATTTGCAAGTGAAGGTAAGCCGTTTGATATTAACGAAGATGATTTGCCATTT
TAA
ATGATGAATCGTGTAGTGCTTGTAGGACGATTAACTAAAGACCCTGAATTACGTTACACTCCAGCTAGTGTGGCCGTTGC
GACTTTTACATTAGCTGTAAATAGAACATTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGTATGGCAGGCGTTGATGGACGCATACAGACTCGA
AATTATGAAGATAACGACGGTAAACGTGTTTTTGTTACTGAAGTAGTTGCTGAAACAGTTCAATTCTTAGAGCCTAAAAA
TAACAATGCAGAAGGCGCTACATCGAATAATTATCAAAACGAGGCTAATTATTCAAATAACAATAAAACAAGCTCATATC
GAGCGGATACGAGCCAGAAGAGTGATTCATTTGCAAGTGAAGGTAAGCCGTTTGATATTAACGAAGATGATTTGCCATTT
TAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
63.372 |
100 |
0.681 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.556 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.264 |
66.25 |
0.412 |