Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   GAPWK_RS11645 Genome accession   NZ_CP007445
Coordinates   2601761..2602081 (-) Length   106 a.a.
NCBI ID   WP_025316400.1    Uniprot ID   -
Organism   Gilliamella apicola strain wkB1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2596761..2607081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAPWK_RS11620 (GAPWK_2322) - 2597391..2598089 (-) 699 WP_025316395.1 Bax inhibitor-1/YccA family protein -
  GAPWK_RS11625 (GAPWK_2323) moaE 2598146..2598589 (-) 444 WP_110287296.1 molybdopterin synthase catalytic subunit MoaE -
  GAPWK_RS11630 (GAPWK_2324) moaD 2598594..2598839 (-) 246 WP_025316397.1 molybdopterin synthase sulfur carrier subunit -
  GAPWK_RS11635 (GAPWK_2325) moaC 2598832..2599323 (-) 492 WP_025316398.1 cyclic pyranopterin monophosphate synthase MoaC -
  GAPWK_RS11640 (GAPWK_2326) priA 2599543..2601711 (+) 2169 WP_025316399.1 primosomal protein N' -
  GAPWK_RS11645 (GAPWK_2327) comE1/comEA 2601761..2602081 (-) 321 WP_025316400.1 helix-hairpin-helix domain-containing protein Machinery gene
  GAPWK_RS11650 (GAPWK_2328) - 2602235..2604094 (-) 1860 WP_025316401.1 SurA N-terminal domain-containing protein -
  GAPWK_RS11655 (GAPWK_2329) lon 2604227..2606662 (-) 2436 WP_025316402.1 endopeptidase La -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11570.36 Da        Isoelectric Point: 7.9733

>NTDB_id=119411 GAPWK_RS11645 WP_025316400.1 2601761..2602081(-) (comE1/comEA) [Gilliamella apicola strain wkB1]
MKLFSIFCILLSSITFSGLSFADNSSNEVTKNEVTQKEQQQLIQVNINTATAEELAKVLTGIGISKAKKIVEYREKFGSF
VSIEQLKEVSGIGQATLDKNVGKIAL

Nucleotide


Download         Length: 321 bp        

>NTDB_id=119411 GAPWK_RS11645 WP_025316400.1 2601761..2602081(-) (comE1/comEA) [Gilliamella apicola strain wkB1]
ATGAAACTATTTTCAATTTTTTGTATTTTATTATCAAGTATCACTTTTTCCGGATTAAGTTTTGCGGATAATTCATCTAA
TGAAGTAACTAAAAATGAAGTAACTCAAAAGGAACAGCAACAACTTATACAAGTCAATATTAATACAGCTACAGCAGAAG
AGTTAGCTAAAGTATTAACAGGTATAGGGATAAGTAAAGCCAAAAAAATTGTTGAATATCGTGAAAAATTTGGGTCATTT
GTTTCTATAGAACAATTGAAAGAAGTATCTGGTATTGGTCAAGCAACATTGGACAAAAATGTAGGTAAAATAGCTTTATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

46.847

100

0.491
  comEA/comE1 Glaesserella parasuis strain SC1401

48.113

100

0.481
  comEA Vibrio parahaemolyticus RIMD 2210633

40.187

100

0.406
  comEA Vibrio campbellii strain DS40M4

39.623

100

0.396

Multiple sequence alignment