Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACOFKU_RS09210 Genome accession   NZ_OZ241361
Coordinates   1994627..1996735 (-) Length   702 a.a.
NCBI ID   WP_419811901.1    Uniprot ID   -
Organism   MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1989627..2001735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKU_RS09195 - 1991408..1992958 (-) 1551 WP_419811898.1 AAA family ATPase -
  ACOFKU_RS09200 aroB 1993007..1994098 (-) 1092 WP_419811899.1 3-dehydroquinate synthase -
  ACOFKU_RS09205 aroK 1994114..1994623 (-) 510 WP_419811900.1 shikimate kinase AroK -
  ACOFKU_RS09210 pilQ 1994627..1996735 (-) 2109 WP_419811901.1 type IV pilus secretin PilQ Machinery gene
  ACOFKU_RS09215 - 1996738..1997277 (-) 540 WP_419811902.1 pilus assembly protein PilP -
  ACOFKU_RS09220 - 1997279..1997923 (-) 645 WP_419811903.1 type 4a pilus biogenesis protein PilO -
  ACOFKU_RS09225 - 1997923..1998477 (-) 555 WP_419811904.1 PilN domain-containing protein -
  ACOFKU_RS09230 pilM 1998477..1999538 (-) 1062 WP_419813659.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 76405.75 Da        Isoelectric Point: 4.3425

>NTDB_id=1170820 ACOFKU_RS09210 WP_419811901.1 1994627..1996735(-) (pilQ) [MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96]
MIMQKVAVKSTKITAMIALLCSMAFSAWAVELQNIRFASLPGDVTEIELEFDGTPPDVKGYTIEKPARISLDMIGAGSVL
KAKKHQIGTGNARSAMILPTKDRTRLVVNLVTLVDYSTRVNGNTLILNVGSAESQARFSQADNAFTQAPLSSVNEMKVVN
VDFRRGDLGDGQIQVMLSDDRAAANIRREGGKIIAELENVRLPDALQRRLDVTDFATPVRFVDAKYEDGKTILTIDPTVD
DIEYLAYQTDKLLSINVSELPEEAVEERKKQFPFTGEKLSLNFQNIEVRAVLQLIADFTGLNLVASDTVQGSITLRLQNV
PWDQALDLVLKTKALGKRQMGSVLLIAPAEEIAAREKIELEAVKQVEELAPLITEYMQLNYAKASDLADLLTSEEGLLSA
RGTAVVDERTNTLLMKDTASNLERVREALVLLDVPVRQVLIEARIVIANTNVGEEIGVQWGGAGYKNNGDNWQTIGGSTQ
TVSEANQILFDRATSENGTSDQEINFPQANVVDFGVTNPAATSLALGYQTADYLLNLELAAIETDGNAEIVSQPRVITSD
GQTAIIESGTEIPFQEASSSGATSVSFRSAVLKLEVTPQITPDDRIIMDLIINQDSVGQATPAGPAIDTNAVETQVLVDN
GETVVLGGIFRSEEVKTINKTPFLGDLPLIGALFRYTNYTEEKSELLVFITPRLVKDSLTSR

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=1170820 ACOFKU_RS09210 WP_419811901.1 1994627..1996735(-) (pilQ) [MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96]
ATGATAATGCAAAAGGTGGCCGTAAAAAGCACAAAAATAACGGCGATGATTGCCTTGCTATGCTCTATGGCGTTTTCTGC
ATGGGCGGTTGAGCTACAAAATATTCGCTTTGCTTCTTTGCCTGGTGATGTTACTGAAATCGAACTGGAGTTTGATGGAA
CACCACCTGATGTTAAAGGTTATACCATTGAAAAACCGGCACGGATCTCACTTGATATGATTGGTGCTGGCAGTGTTCTG
AAAGCTAAGAAGCATCAGATCGGCACTGGTAATGCCCGTAGTGCCATGATCTTACCAACCAAGGATCGGACTCGCTTGGT
GGTGAATTTGGTGACTCTAGTGGATTATTCTACGCGGGTAAATGGTAATACTCTGATTCTTAATGTGGGTTCTGCTGAAT
CCCAAGCACGTTTCTCTCAGGCTGATAACGCATTTACTCAAGCTCCATTATCTTCTGTTAATGAAATGAAAGTTGTTAAC
GTTGATTTTCGTCGGGGTGATCTGGGGGATGGGCAGATACAGGTGATGCTGAGTGACGATCGTGCTGCGGCGAATATTCG
TCGCGAAGGCGGTAAAATTATTGCTGAACTGGAAAATGTTCGGTTGCCGGATGCGTTGCAGCGTCGTTTGGATGTAACTG
ATTTTGCCACTCCGGTACGGTTTGTTGATGCCAAGTATGAGGATGGAAAAACCATTCTGACGATTGACCCTACGGTTGAC
GATATTGAGTATCTGGCATATCAGACGGACAAACTTCTATCGATTAATGTGTCAGAATTACCGGAAGAAGCGGTAGAAGA
ACGTAAAAAACAATTCCCGTTCACCGGTGAAAAGCTATCCCTGAATTTCCAGAATATTGAAGTTCGTGCTGTGTTGCAGC
TGATTGCTGACTTTACTGGCTTGAATCTCGTTGCTTCGGATACCGTACAGGGCAGTATTACCTTACGTTTACAGAATGTT
CCCTGGGATCAGGCTTTGGATCTGGTATTAAAGACTAAAGCATTAGGTAAGCGTCAGATGGGTTCTGTTTTATTAATTGC
CCCAGCTGAAGAGATTGCAGCACGGGAAAAAATTGAACTGGAAGCGGTCAAGCAAGTTGAAGAGCTGGCTCCACTGATCA
CAGAGTATATGCAGCTTAATTATGCTAAAGCATCAGATTTGGCGGACCTGCTAACATCGGAAGAAGGTCTGTTGTCGGCT
CGCGGTACTGCTGTGGTTGATGAGCGAACTAATACTCTGTTAATGAAAGATACTGCCAGTAACCTGGAACGTGTGCGTGA
GGCATTAGTATTGTTAGATGTTCCGGTACGTCAGGTATTGATTGAAGCTCGTATTGTGATTGCCAATACCAATGTTGGAG
AGGAAATTGGCGTTCAGTGGGGGGGAGCCGGTTATAAAAACAATGGCGATAATTGGCAAACAATTGGTGGTAGTACTCAA
ACGGTAAGTGAAGCCAATCAAATTTTATTTGATCGGGCGACCAGTGAAAATGGCACTAGTGATCAGGAAATTAACTTCCC
ACAAGCGAATGTTGTGGACTTCGGTGTAACTAACCCTGCTGCAACTTCATTGGCGCTTGGCTATCAAACAGCCGATTACT
TATTGAATCTTGAACTGGCTGCTATTGAAACGGATGGAAATGCGGAAATTGTTTCTCAACCCCGAGTAATTACTTCAGAC
GGTCAGACGGCAATTATTGAATCCGGCACAGAGATTCCTTTCCAGGAAGCATCCTCCAGTGGTGCAACCAGTGTGTCATT
CCGTTCCGCGGTATTAAAGCTGGAAGTGACACCACAAATCACTCCGGATGATCGTATTATTATGGATTTAATTATTAATC
AGGATTCCGTTGGGCAAGCTACTCCGGCTGGTCCAGCCATTGATACTAATGCGGTTGAGACTCAGGTGTTGGTTGATAAT
GGAGAAACGGTTGTTTTGGGGGGGATCTTCCGCTCAGAAGAAGTTAAAACTATTAATAAAACGCCCTTCCTTGGAGACTT
ACCGTTGATTGGGGCTTTATTCCGTTATACCAATTACACTGAAGAAAAGTCAGAATTATTGGTGTTTATCACCCCACGTT
TGGTGAAGGACAGCTTAACCAGCCGCTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(541-696)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-438)

AMIN domain (AMIN)

(43-128)

Secretin and TonB N terminus short domain (STN)

(302-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

47.814

100

0.483
  pilQ Acinetobacter baumannii strain A118

41.136

100

0.423
  pilQ Acinetobacter baumannii D1279779

41.136

100

0.423
  comQ Acinetobacter baylyi ADP1

40.368

100

0.406
  pilQ Legionella pneumophila strain Lp02

39.301

97.863

0.385
  pilQ Legionella pneumophila strain ERS1305867

39.528

96.581

0.382

Multiple sequence alignment