Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACNUEH_RS04700 Genome accession   NZ_OZ197095
Coordinates   975718..976872 (-) Length   384 a.a.
NCBI ID   WP_049080449.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate 23S01404-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 970718..981872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEH_RS04680 - 971879..972529 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  ACNUEH_RS04685 - 972635..973555 (+) 921 WP_000084546.1 DMT family transporter -
  ACNUEH_RS04690 - 973947..974516 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ACNUEH_RS04695 dprA 974567..975697 (-) 1131 WP_049080458.1 DNA-processing protein DprA Machinery gene
  ACNUEH_RS04700 tsaP 975718..976872 (-) 1155 WP_049080449.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACNUEH_RS04705 def 976995..977525 (+) 531 WP_001196539.1 peptide deformylase -
  ACNUEH_RS04710 - 977562..977990 (+) 429 WP_000231981.1 DUF2946 family protein -
  ACNUEH_RS04715 - 978063..980177 (+) 2115 WP_057065676.1 TonB-dependent copper receptor -
  ACNUEH_RS04720 - 980231..980437 (+) 207 WP_000182542.1 hypothetical protein -
  ACNUEH_RS04725 - 980507..981721 (-) 1215 WP_416632330.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42382.32 Da        Isoelectric Point: 8.5866

>NTDB_id=1169437 ACNUEH_RS04700 WP_049080449.1 975718..976872(-) (tsaP) [Acinetobacter baumannii isolate 23S01404-6]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHHPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTHLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYVVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1169437 ACNUEH_RS04700 WP_049080449.1 975718..976872(-) (tsaP) [Acinetobacter baumannii isolate 23S01404-6]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGAGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATCATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTACACTGGGCAAACCACTCACT
TACAACCACAAGTTCGCGTCGAGGCATTAAATAATAGCGTTCCTGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATGTGGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTTCGTCGTGGTGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTTA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.219

100

0.992

Multiple sequence alignment