Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB3235_RS09680 Genome accession   NZ_OZ061221
Coordinates   1982729..1984399 (-) Length   556 a.a.
NCBI ID   WP_367378225.1    Uniprot ID   -
Organism   Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1977729..1989399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3235_RS09650 - 1977844..1980033 (-) 2190 WP_367378223.1 penicillin-binding transpeptidase domain-containing protein -
  AB3235_RS09655 ftsL 1980034..1980411 (-) 378 WP_086303493.1 cell division protein FtsL -
  AB3235_RS09660 rsmH 1980417..1981370 (-) 954 WP_086303492.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  AB3235_RS09665 mraZ 1981386..1981817 (-) 432 WP_367378224.1 division/cell wall cluster transcriptional repressor MraZ -
  AB3235_RS09670 - 1981986..1982357 (-) 372 WP_010780216.1 DUF3397 domain-containing protein -
  AB3235_RS09675 - 1982586..1982702 (+) 117 WP_010745911.1 DUF4044 domain-containing protein -
  AB3235_RS09680 recN 1982729..1984399 (-) 1671 WP_367378225.1 DNA repair protein RecN Machinery gene
  AB3235_RS09685 - 1984429..1984887 (-) 459 WP_010780214.1 arginine repressor -
  AB3235_RS09690 - 1984903..1985718 (-) 816 WP_086303489.1 TlyA family RNA methyltransferase -
  AB3235_RS09695 - 1985760..1986647 (-) 888 WP_367378226.1 polyprenyl synthetase family protein -
  AB3235_RS09700 - 1986648..1986872 (-) 225 WP_010780211.1 exodeoxyribonuclease VII small subunit -
  AB3235_RS09705 xseA 1986872..1988206 (-) 1335 WP_314581116.1 exodeoxyribonuclease VII large subunit -
  AB3235_RS09710 - 1988222..1989079 (-) 858 WP_044926539.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62937.53 Da        Isoelectric Point: 4.6071

>NTDB_id=1165540 AB3235_RS09680 WP_367378225.1 1982729..1984399(-) (recN) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
MLQELTIKNFAIISSLHLGFTDGMTALTGETGAGKSIIIDAVSLLAGARSSIEYIRQGSEKCLIEGLFDLPKQNEFQLLM
EELGIEVDEAGLIVQRDLNVSGKSISRVNGRIVTLANLRRIGQFLVDIQGQNDHQELMHPESHLRLLDSFGDAAFQQIKL
TYQTAYRSYITLVNQVKKFKQNEQSFVQRIDMLTFQQEEIGNAELTVGEEEKLLEEREKLTNYQRIVDSLSNSYQAMTNE
ETSSLDAIGSASQELQTIASLDKEYENISDNVHSAYYLLQDAVSEIGRQLDLLELDEERLDLVNERLELIHQLKRKYGDS
IEHILKYYDQISQELLDSDFSGDKLEKLEKELIDKEEQLHELAKTLQTARKNMAEKLEAEIQRELKDLYMENARFKVVFK
EIPFVSDGIDEVEFYITTNPGEPLKPLVKVASGGEISRIMLALKTIFSKTQELTSIVFDEVDTGVSGRVAQAIADKIYQI
GKNSQALCITHLPQVAAKADHQLFIRKEIVDGRTVTKVEEMKEADRTEEIARMLAGTEITDLTVKHAKELLQLAKK

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=1165540 AB3235_RS09680 WP_367378225.1 1982729..1984399(-) (recN) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
ATGTTACAAGAATTGACAATCAAAAATTTTGCCATCATTTCTTCGTTGCACTTGGGTTTTACCGATGGCATGACAGCTTT
GACTGGTGAAACGGGTGCCGGAAAATCAATTATTATTGATGCAGTCAGCTTATTAGCGGGTGCCCGTTCATCCATCGAAT
ACATTCGACAAGGCAGCGAGAAATGTTTGATTGAAGGCCTCTTTGATTTACCGAAGCAGAATGAATTTCAGCTTCTCATG
GAGGAGCTAGGTATTGAGGTTGACGAAGCAGGGCTCATCGTTCAAAGAGACTTGAATGTCTCTGGAAAAAGTATTTCCCG
AGTCAATGGCAGGATCGTGACGCTAGCTAACTTACGACGAATTGGACAGTTTTTAGTTGATATTCAGGGGCAAAATGATC
ATCAGGAGCTTATGCATCCTGAATCCCATTTACGATTGCTGGATAGTTTTGGTGATGCTGCTTTTCAGCAAATTAAACTG
ACATATCAAACGGCGTATCGAAGCTATATTACTTTGGTGAACCAAGTCAAAAAGTTTAAGCAAAACGAACAATCCTTTGT
CCAACGAATCGATATGTTGACGTTTCAACAAGAAGAGATCGGAAATGCAGAATTGACAGTTGGGGAAGAGGAGAAGCTGC
TTGAAGAACGTGAGAAGCTGACGAACTACCAACGAATCGTCGACAGTCTTTCGAACAGTTATCAAGCGATGACGAACGAG
GAAACGAGTTCTCTTGATGCGATTGGGTCAGCGAGTCAAGAACTGCAAACAATTGCTTCTCTAGATAAAGAGTACGAAAA
TATCTCAGACAATGTTCATAGCGCATACTATTTGCTGCAAGACGCTGTTAGTGAGATAGGGCGTCAGTTGGATCTTTTGG
AGTTAGATGAAGAGCGACTGGATTTAGTCAATGAGCGTTTAGAATTGATCCATCAATTGAAAAGAAAATATGGCGATTCG
ATCGAGCATATTTTGAAATACTATGATCAAATCAGTCAAGAATTACTAGACTCTGATTTTTCCGGAGACAAGCTTGAAAA
GCTTGAGAAGGAGCTAATCGACAAAGAGGAGCAGCTTCACGAATTAGCGAAGACGCTGCAAACTGCTCGAAAAAATATGG
CGGAGAAGTTAGAAGCAGAAATTCAACGAGAGTTGAAAGATCTTTATATGGAAAACGCCCGATTTAAAGTAGTATTTAAG
GAAATTCCTTTTGTATCAGATGGTATAGATGAAGTAGAATTCTATATTACGACCAATCCTGGGGAACCCCTGAAGCCTTT
AGTTAAGGTAGCATCCGGCGGAGAGATTTCTCGGATCATGTTGGCATTAAAAACCATTTTTTCGAAAACGCAAGAGCTGA
CGAGTATCGTCTTTGATGAAGTTGACACAGGAGTGAGTGGTCGTGTCGCACAAGCAATTGCAGATAAAATTTATCAAATC
GGAAAGAATTCTCAGGCGCTCTGCATCACGCACCTTCCTCAAGTAGCTGCAAAAGCAGATCATCAACTATTTATTCGCAA
AGAAATCGTTGACGGTCGGACAGTGACGAAGGTGGAAGAAATGAAGGAAGCAGATCGGACAGAAGAGATCGCGCGAATGC
TTGCTGGAACAGAAATTACCGATCTAACGGTGAAGCATGCCAAAGAATTATTGCAATTAGCAAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.596

100

0.498

Multiple sequence alignment