Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACE4RJ_RS05765 Genome accession   NZ_OZ059821
Coordinates   1180048..1180617 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate H3_23S01314-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175048..1185617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RJ_RS05740 cysE 1176261..1176908 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACE4RJ_RS05745 cysS 1176892..1178292 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACE4RJ_RS05750 - 1178285..1178689 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACE4RJ_RS05755 rlmB 1178697..1179443 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACE4RJ_RS05760 - 1179443..1179967 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACE4RJ_RS05765 sigH 1180048..1180617 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACE4RJ_RS05770 rpmG 1180732..1180875 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACE4RJ_RS05775 secE 1180931..1181113 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACE4RJ_RS05780 nusG 1181126..1181674 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACE4RJ_RS05785 rplK 1181855..1182277 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACE4RJ_RS05790 rplA 1182485..1183177 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACE4RJ_RS05795 rplJ 1183449..1183949 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACE4RJ_RS05800 rplL 1183992..1184360 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACE4RJ_RS05805 - 1184535..1185143 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1165243 ACE4RJ_RS05765 WP_000872866.1 1180048..1180617(+) (sigH) [Staphylococcus aureus isolate H3_23S01314-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1165243 ACE4RJ_RS05765 WP_000872866.1 1180048..1180617(+) (sigH) [Staphylococcus aureus isolate H3_23S01314-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment