Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   U9966_RS02720 Genome accession   NZ_OY856306
Coordinates   563678..564028 (-) Length   116 a.a.
NCBI ID   WP_306346648.1    Uniprot ID   A0AAW8CGX4
Organism   Pasteurella atlantica isolate PAF6K1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 558678..569028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9966_RS02690 xerC 558930..559850 (-) 921 WP_306346651.1 tyrosine recombinase XerC -
  U9966_RS02695 mscL 559890..560288 (-) 399 WP_211597245.1 large-conductance mechanosensitive channel protein MscL -
  U9966_RS02700 rpsT 560358..560621 (-) 264 WP_090919987.1 30S ribosomal protein S20 -
  U9966_RS02705 murJ 560896..562425 (+) 1530 WP_306346715.1 murein biosynthesis integral membrane protein MurJ -
  U9966_RS02710 hemG 562425..562958 (+) 534 WP_306346650.1 menaquinone-dependent protoporphyrinogen IX dehydrogenase -
  U9966_RS02715 - 563048..563611 (+) 564 WP_306346649.1 biotin transporter BioY -
  U9966_RS02720 comEA/comE1 563678..564028 (-) 351 WP_306346648.1 helix-hairpin-helix domain-containing protein Machinery gene
  U9966_RS02725 - 564265..565194 (+) 930 WP_306346647.1 LysM-like peptidoglycan-binding domain-containing protein -
  U9966_RS02730 waaF 565248..566288 (+) 1041 WP_306346646.1 lipopolysaccharide heptosyltransferase II -
  U9966_RS02735 rfaC 566285..567265 (+) 981 WP_306346645.1 lipopolysaccharide heptosyltransferase RfaC -
  U9966_RS02740 ubiB 567255..568877 (+) 1623 WP_306346644.1 ubiquinone biosynthesis regulatory protein kinase UbiB -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12668.73 Da        Isoelectric Point: 10.7574

>NTDB_id=1162143 U9966_RS02720 WP_306346648.1 563678..564028(-) (comEA/comE1) [Pasteurella atlantica isolate PAF6K1]
MKTLKICGFGLLLGLLTTTVTAKENSNTNHQPTKNNQQLAVKKVTTVKTNLNAVNINTATAAELKDKLSGIGIKKAQAIV
EYRQKNGKFLTVEQITEVSGIGKATLEKNRERIFVN

Nucleotide


Download         Length: 351 bp        

>NTDB_id=1162143 U9966_RS02720 WP_306346648.1 563678..564028(-) (comEA/comE1) [Pasteurella atlantica isolate PAF6K1]
ATGAAAACACTAAAAATCTGCGGATTTGGATTATTATTAGGTTTATTGACCACAACGGTTACTGCCAAAGAAAACTCAAA
TACAAATCACCAACCAACAAAGAATAATCAACAACTTGCTGTAAAAAAAGTAACCACTGTAAAAACTAATTTAAATGCAG
TAAATATTAACACAGCTACTGCGGCTGAATTAAAAGATAAATTATCTGGCATTGGGATAAAAAAAGCACAAGCTATTGTT
GAATATCGTCAAAAAAATGGTAAATTCTTGACTGTGGAGCAAATTACGGAGGTTTCTGGTATTGGTAAAGCGACATTAGA
AAAAAATCGAGAAAGAATTTTCGTAAACTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(50-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

59.829

100

0.603
  comEA Acinetobacter baumannii D1279779

38.655

100

0.397
  comEA Acinetobacter baumannii strain A118

37.815

100

0.388
  comEA Acinetobacter baylyi ADP1

48.315

76.724

0.371

Multiple sequence alignment