Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QML50_RS00595 Genome accession   NZ_OX346403
Coordinates   116411..117466 (+) Length   351 a.a.
NCBI ID   WP_087213931.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111411..122466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML50_RS00575 (CIRMBP1283_00110) - 111808..112746 (+) 939 WP_281956610.1 helix-turn-helix domain-containing protein -
  QML50_RS00580 (CIRMBP1283_00111) pgsA 112857..113435 (+) 579 WP_087213988.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QML50_RS00590 (CIRMBP1283_00114) cinA 115040..116287 (+) 1248 WP_281956612.1 competence/damage-inducible protein A Machinery gene
  QML50_RS00595 (CIRMBP1283_00115) recA 116411..117466 (+) 1056 WP_087213931.1 recombinase RecA Machinery gene
  QML50_RS00600 (CIRMBP1283_00116) rny 117685..119244 (+) 1560 WP_087213930.1 ribonuclease Y -
  QML50_RS00605 (CIRMBP1283_00117) - 119462..119683 (+) 222 WP_016250396.1 helix-turn-helix transcriptional regulator -
  QML50_RS00610 (CIRMBP1283_00118) - 119670..120431 (+) 762 WP_087213929.1 DUF3169 family protein -
  QML50_RS00615 (CIRMBP1283_00119) - 120460..121359 (+) 900 WP_281956613.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37741.92 Da        Isoelectric Point: 4.8258

>NTDB_id=1154979 QML50_RS00595 WP_087213931.1 116411..117466(+) (recA) [Enterococcus cecorum isolate CIRMBP-1283]
MADDRKTALDAALKKIEKNFGKGSIMKLGEKADQQISTVPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKQGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRSEQLKQGSDIVGNR
TKIKVVKNKVAPPFKVAEIDIMYGEGISQEGELLDMAVNVDLVDKSGAWYSYNGERIGQGRENVKNYMKDHPEMVSELLV
KVRDAYGIGDGSTIEVTENTGETEQETLDLE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1154979 QML50_RS00595 WP_087213931.1 116411..117466(+) (recA) [Enterococcus cecorum isolate CIRMBP-1283]
ATGGCCGATGATCGTAAAACAGCCTTAGATGCTGCATTGAAAAAAATAGAAAAAAACTTTGGTAAAGGCTCTATCATGAA
GCTTGGTGAAAAAGCCGACCAACAAATCTCCACCGTACCAAGTGGCTCGCTTGCATTAGATGTCGCTTTAGGCGTAGGGG
GTTATCCAAGAGGGCGGATTATTGAAGTATACGGCCCAGAAAGTTCTGGTAAGACTACGGTTGCTTTACATGCGATTGCC
GAAGTTCAAAAACAAGGCGGAACTGCAGCCTTTATCGATGCCGAACACGCTTTAGATCCAGCCTATGCCAAAAAGCTAGG
CGTGAATATTGACGAATTACTTTTATCACAGCCAGATACCGGTGAACAAGGTCTAGAGATTGCCGATGCCCTTGTTTCTA
GTGGCGCGGTCGATATTATTGTCATTGACTCAGTTGCCGCTTTAGTGCCACGTGCCGAAATCGATGGCGAAATGGGAGAC
ACACACGTTGGGTTACAAGCCCGTTTAATGTCTCAAGCCCTACGTAAATTATCTGGTACGATTAATAAAACCAAGACCAT
TGCGATTTTCATCAACCAAATCCGTGAAAAAGTCGGTGTGATGTTTGGGAATCCAGAAACCACACCTGGTGGACGTGCCT
TGAAGTTCTATGCGACCGTTCGTTTAGAAGTGCGTCGTTCTGAACAATTAAAACAAGGTAGCGATATTGTCGGTAACCGT
ACCAAGATTAAAGTCGTGAAAAATAAAGTGGCGCCACCATTTAAAGTCGCTGAAATTGACATCATGTATGGCGAAGGAAT
TTCTCAAGAAGGGGAATTGCTAGATATGGCGGTCAATGTTGATTTAGTCGATAAGAGCGGAGCATGGTACTCGTACAATG
GTGAACGAATTGGACAAGGACGCGAAAATGTCAAAAACTATATGAAAGATCACCCAGAAATGGTCAGTGAGCTTTTAGTC
AAAGTTCGTGATGCCTATGGTATTGGCGATGGTAGCACCATTGAAGTAACTGAAAATACCGGAGAAACCGAACAAGAAAC
ATTAGATTTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.098

93.447

0.758
  recA Bacillus subtilis subsp. subtilis str. 168

77.039

94.302

0.726
  recA Streptococcus mitis NCTC 12261

68.347

100

0.695
  recA Streptococcus mitis SK321

68.347

100

0.695
  recA Streptococcus pneumoniae D39

69.164

98.86

0.684
  recA Streptococcus pneumoniae Rx1

69.164

98.86

0.684
  recA Streptococcus pneumoniae R6

69.164

98.86

0.684
  recA Streptococcus pneumoniae TIGR4

69.164

98.86

0.684
  recA Streptococcus pyogenes NZ131

71.299

94.302

0.672
  recA Lactococcus lactis subsp. cremoris KW2

69.851

95.442

0.667
  recA Streptococcus mutans UA159

67.241

99.145

0.667
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.329

93.447

0.601
  recA Neisseria gonorrhoeae strain FA1090

61.584

97.151

0.598
  recA Neisseria gonorrhoeae MS11

61.584

97.151

0.598
  recA Neisseria gonorrhoeae MS11

61.584

97.151

0.598
  recA Ralstonia pseudosolanacearum GMI1000

64.22

93.162

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.272

92.308

0.584
  recA Vibrio cholerae strain A1552

63.272

92.308

0.584
  recA Glaesserella parasuis strain SC1401

59.593

98.006

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.31

93.732

0.584
  recA Acinetobacter baumannii D1279779

62.654

92.308

0.578
  recA Acinetobacter baylyi ADP1

62.037

92.308

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.606

94.017

0.57
  recA Pseudomonas stutzeri DSM 10701

61.3

92.023

0.564
  recA Helicobacter pylori strain NCTC11637

59.816

92.877

0.556
  recA Helicobacter pylori 26695

59.816

92.877

0.556

Multiple sequence alignment