Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   RG28_RS21230 Genome accession   NZ_CP010122
Coordinates   3975643..3976119 (-) Length   158 a.a.
NCBI ID   WP_073521125.1    Uniprot ID   -
Organism   Escherichia coli strain C5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3970643..3981119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG28_RS21185 (RG28_20190) mug 3971396..3971902 (-) 507 WP_000228937.1 G/U mismatch-specific DNA glycosylase -
  RG28_RS21195 (RG28_20200) - 3972202..3973047 (-) 846 WP_063848184.1 DUF4942 domain-containing protein -
  RG28_RS21200 (RG28_20205) - 3973144..3973341 (-) 198 WP_063848185.1 DUF957 domain-containing protein -
  RG28_RS21205 (RG28_20210) - 3973361..3973849 (-) 489 WP_063848186.1 DUF5983 family protein -
  RG28_RS21210 (RG28_20215) - 3973846..3974223 (-) 378 WP_063848187.1 TA system toxin CbtA family protein -
  RG28_RS21215 (RG28_20220) cbeA 3974270..3974644 (-) 375 WP_063848188.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  RG28_RS21220 (RG28_20225) - 3974694..3975338 (-) 645 WP_063848189.1 hypothetical protein -
  RG28_RS21225 (RG28_20230) - 3975353..3975574 (-) 222 WP_063848190.1 DUF987 domain-containing protein -
  RG28_RS21230 (RG28_20235) ysxA/radC 3975643..3976119 (-) 477 WP_073521125.1 RadC family protein Machinery gene
  RG28_RS21235 (RG28_20240) - 3976135..3976620 (-) 486 WP_057697935.1 antirestriction protein -
  RG28_RS21240 (RG28_20245) - 3976712..3977530 (-) 819 WP_073521126.1 DUF932 domain-containing protein -
  RG28_RS21255 (RG28_20250) - 3977823..3978278 (-) 456 WP_005051844.1 IrmA family protein -
  RG28_RS21260 (RG28_20255) - 3978354..3980870 (-) 2517 WP_063848128.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17640.29 Da        Isoelectric Point: 7.2517

>NTDB_id=115446 RG28_RS21230 WP_073521125.1 3975643..3976119(-) (ysxA/radC) [Escherichia coli strain C5]
MQQLSFLPGEMTPGERSLIQRALKTLGRHLHEPGVAFTSTHAAREWLILNMVGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=115446 RG28_RS21230 WP_073521125.1 3975643..3976119(-) (ysxA/radC) [Escherichia coli strain C5]
ATGCAACAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGG
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGAGAATGGCTGATTCTGAACATGGTAGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCTGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.037

100

0.392
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment