Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VPUCM_RS00735 Genome accession   NZ_CP007004
Coordinates   156385..157110 (-) Length   241 a.a.
NCBI ID   WP_025441142.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus UCM-V493     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151385..162110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPUCM_RS00710 (VPUCM_0137) - 152505..152996 (+) 492 WP_005458943.1 type II secretion system protein M -
  VPUCM_RS00715 (VPUCM_0138) - 152998..153759 (+) 762 WP_025441141.1 type II secretion system protein N -
  VPUCM_RS00720 (VPUCM_0139) cysQ 154044..154871 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VPUCM_RS00725 (VPUCM_0140) nudE 154913..155482 (-) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  VPUCM_RS00730 (VPUCM_0141) nfuA 155703..156287 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  VPUCM_RS00735 (VPUCM_0142) comF 156385..157110 (-) 726 WP_025441142.1 amidophosphoribosyltransferase Machinery gene
  VPUCM_RS00740 (VPUCM_0143) bioH 157195..157962 (+) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  VPUCM_RS00745 (VPUCM_0144) - 158086..158550 (+) 465 WP_005459035.1 hypothetical protein -
  VPUCM_RS00750 (VPUCM_0145) - 158684..161005 (-) 2322 WP_025441144.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27545.65 Da        Isoelectric Point: 8.8547

>NTDB_id=115438 VPUCM_RS00735 WP_025441142.1 156385..157110(-) (comF) [Vibrio parahaemolyticus UCM-V493]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQSFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGNKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=115438 VPUCM_RS00735 WP_025441142.1 156385..157110(-) (comF) [Vibrio parahaemolyticus UCM-V493]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAAAGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGAACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment