Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DTQ61_RS09520 Genome accession   NZ_LT985192
Coordinates   1936092..1936808 (+) Length   238 a.a.
NCBI ID   WP_069704252.1    Uniprot ID   -
Organism   Pseudomonas syringae strain CFBP 2116     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1931092..1941808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTQ61_RS09500 (PSCFBP2116_01790) - 1931172..1931795 (+) 624 WP_004657835.1 glutathione S-transferase -
  DTQ61_RS09505 (PSCFBP2116_01791) - 1931978..1932910 (+) 933 WP_005733932.1 ABC transporter ATP-binding protein -
  DTQ61_RS09510 (PSCFBP2116_01792) - 1932907..1933695 (+) 789 WP_002552673.1 ABC transporter permease -
  DTQ61_RS09515 (PSCFBP2116_01793) - 1933832..1936049 (+) 2218 Protein_1754 DNA internalization-related competence protein ComEC/Rec2 -
  DTQ61_RS09520 (PSCFBP2116_01794) exbB 1936092..1936808 (+) 717 WP_069704252.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DTQ61_RS09525 (PSCFBP2116_01795) - 1936805..1937236 (+) 432 WP_002552677.1 ExbD/TolR family protein -
  DTQ61_RS09530 (PSCFBP2116_01796) lpxK 1937236..1938231 (+) 996 WP_060403565.1 tetraacyldisaccharide 4'-kinase -
  DTQ61_RS09535 (PSCFBP2116_01797) - 1938249..1938434 (+) 186 WP_002552679.1 Trm112 family protein -
  DTQ61_RS09540 (PSCFBP2116_01798) kdsB 1938431..1939195 (+) 765 WP_060403564.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DTQ61_RS09545 (PSCFBP2116_01799) murB 1939230..1940249 (+) 1020 WP_054072179.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25846.43 Da        Isoelectric Point: 7.9113

>NTDB_id=1148960 DTQ61_RS09520 WP_069704252.1 1936092..1936808(+) (exbB) [Pseudomonas syringae strain CFBP 2116]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LVGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1148960 DTQ61_RS09520 WP_069704252.1 1936092..1936808(+) (exbB) [Pseudomonas syringae strain CFBP 2116]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGC
CGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGAC
TCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAATTCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCTGAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTG
GCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCGGCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTA
CTCGTCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCGTCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCG
CTTTCTGCAAAGTCGCGTCGATGAACTGGTGGTCGGCATGGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.095

88.235

0.689

Multiple sequence alignment