Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C6H39_RS19330 Genome accession   NZ_LT963409
Coordinates   4087386..4088102 (-) Length   238 a.a.
NCBI ID   WP_069704252.1    Uniprot ID   -
Organism   Pseudomonas syringae isolate CFBP3840     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4082386..4093102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H39_RS19305 (CFBP3840_03746) murB 4083945..4084964 (-) 1020 WP_054072179.1 UDP-N-acetylmuramate dehydrogenase -
  C6H39_RS19310 (CFBP3840_03747) kdsB 4084999..4085763 (-) 765 WP_060403564.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6H39_RS19315 (CFBP3840_03748) - 4085760..4085945 (-) 186 WP_002552679.1 Trm112 family protein -
  C6H39_RS19320 (CFBP3840_03749) lpxK 4085963..4086958 (-) 996 WP_060403565.1 tetraacyldisaccharide 4'-kinase -
  C6H39_RS19325 (CFBP3840_03750) - 4086958..4087389 (-) 432 WP_002552677.1 ExbD/TolR family protein -
  C6H39_RS19330 (CFBP3840_03751) exbB 4087386..4088102 (-) 717 WP_069704252.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6H39_RS19335 (CFBP3840_03752) - 4088145..4090362 (-) 2218 Protein_3673 DNA internalization-related competence protein ComEC/Rec2 -
  C6H39_RS19340 (CFBP3840_03753) - 4090499..4091287 (-) 789 WP_002552673.1 ABC transporter permease -
  C6H39_RS19345 (CFBP3840_03754) - 4091284..4092216 (-) 933 WP_005733932.1 ABC transporter ATP-binding protein -
  C6H39_RS19350 (CFBP3840_03755) - 4092399..4093022 (-) 624 WP_004657835.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25846.43 Da        Isoelectric Point: 7.9113

>NTDB_id=1148874 C6H39_RS19330 WP_069704252.1 4087386..4088102(-) (exbB) [Pseudomonas syringae isolate CFBP3840]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LVGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1148874 C6H39_RS19330 WP_069704252.1 4087386..4088102(-) (exbB) [Pseudomonas syringae isolate CFBP3840]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGC
CGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGAC
TCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAATTCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCTGAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTG
GCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCGGCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTA
CTCGTCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCGTCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCG
CTTTCTGCAAAGTCGCGTCGATGAACTGGTGGTCGGCATGGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.095

88.235

0.689

Multiple sequence alignment