Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   CKV85_RS11600 Genome accession   NZ_LT906454
Coordinates   2328132..2329361 (+) Length   409 a.a.
NCBI ID   WP_095123680.1    Uniprot ID   -
Organism   Streptococcus acidominimus strain NCTC11291     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2323132..2334361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS11580 - 2325503..2326951 (-) 1449 Protein_2268 IS1182 family transposase -
  CKV85_RS11595 (SAMEA4504048_02484) rlmH 2327448..2327927 (-) 480 WP_017769779.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CKV85_RS11600 (SAMEA4504048_02485) htrA 2328132..2329361 (+) 1230 WP_095123680.1 S1C family serine protease Regulator
  CKV85_RS11605 (SAMEA4504048_02486) spo0J 2329799..2330566 (+) 768 WP_095123681.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 409 a.a.        Molecular weight: 43220.56 Da        Isoelectric Point: 4.7840

>NTDB_id=1147519 CKV85_RS11600 WP_095123680.1 2328132..2329361(+) (htrA) [Streptococcus acidominimus strain NCTC11291]
MEGISLKKNGKIKLLPTILVGFLAGLVGAYLMLNLSGRSNLSLNDTGQTTTTSKVVYNNTTDTTKAAKTVQDAVVSVINY
QKSSNSSLNDFYSQMFGGQNDSNANNNDMNVYSEGSGVIYKKSGGSAYVVTNNHVIDRAESIEIMLSDGTKVVGDLVGAD
IYSDLAVVKIAADKVSTVAEFADSDKLNVGEIAIAMGSPLGTEYANSVTQGIVSSLSRTVTLKNDNGETISTNAIQTDAA
INPGNSGGALINIKGQVIGINSSKISSTSNAREAVEGMGFAIPSNDVIKIINQLEKNGQVTRPALGITMVDLTELSTSVI
AELKIPESVTGGIVVASVQEGMPASNKLKQYDVITKIDDKDITSSSDLQSILYGHEIGDTIKVTYYRGKDKQTTDIKLTK
STQDLDSRN

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1147519 CKV85_RS11600 WP_095123680.1 2328132..2329361(+) (htrA) [Streptococcus acidominimus strain NCTC11291]
ATGGAGGGAATCTCTTTGAAAAAAAATGGAAAAATCAAATTATTACCGACTATTCTCGTTGGTTTTTTAGCAGGGCTTGT
CGGCGCTTACCTTATGCTAAATCTATCAGGACGCTCCAATTTGTCCTTAAATGATACTGGCCAAACAACAACGACAAGTA
AAGTGGTCTATAACAACACAACCGATACAACAAAGGCAGCTAAAACAGTGCAAGATGCTGTTGTTTCGGTGATTAACTAT
CAAAAATCGTCAAACTCTTCTCTAAATGACTTTTATAGTCAGATGTTTGGTGGGCAAAATGATAGCAATGCCAATAATAA
TGACATGAATGTTTACAGTGAAGGTTCTGGGGTCATTTACAAAAAATCTGGTGGATCAGCCTATGTTGTGACTAACAATC
ATGTGATTGATAGGGCTGAGAGCATTGAAATCATGCTGTCTGATGGTACTAAAGTAGTGGGAGACCTTGTTGGAGCTGAT
ATATATTCTGATTTAGCTGTTGTTAAAATCGCAGCTGATAAAGTATCAACTGTTGCAGAATTTGCAGATTCTGACAAACT
AAACGTTGGTGAAATTGCTATCGCCATGGGAAGTCCTCTTGGTACTGAGTACGCTAACTCAGTCACACAAGGTATTGTAT
CCAGCTTGAGCCGTACCGTTACTTTAAAAAATGACAATGGAGAAACCATTTCAACTAATGCCATTCAAACAGATGCCGCC
ATTAACCCTGGAAACTCTGGTGGTGCTCTTATTAATATCAAGGGACAAGTTATTGGTATCAATTCAAGTAAAATCTCATC
AACTTCTAATGCTAGAGAAGCTGTTGAAGGTATGGGATTTGCCATTCCATCCAATGATGTCATTAAAATTATCAACCAGC
TAGAGAAAAATGGACAAGTTACTCGTCCAGCACTAGGAATTACCATGGTTGACCTTACAGAGCTATCAACCAGTGTCATT
GCTGAGCTTAAGATTCCAGAAAGTGTCACTGGAGGGATTGTTGTCGCATCAGTTCAAGAAGGTATGCCTGCTTCTAATAA
ACTAAAACAATATGATGTGATCACAAAAATTGATGATAAAGACATCACTTCATCAAGTGATCTCCAAAGTATTCTTTATG
GCCATGAAATTGGAGACACTATAAAAGTGACTTATTATCGTGGAAAAGACAAGCAAACAACGGATATCAAACTAACCAAA
TCTACACAAGATCTAGATAGTCGTAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

62.283

98.533

0.614

  htrA Streptococcus mitis NCTC 12261

57.828

96.822

0.56

  htrA Streptococcus pneumoniae Rx1

57.576

96.822

0.557

  htrA Streptococcus pneumoniae D39

57.576

96.822

0.557

  htrA Streptococcus pneumoniae R6

57.576

96.822

0.557

  htrA Streptococcus pneumoniae TIGR4

57.576

96.822

0.557

  htrA Streptococcus gordonii str. Challis substr. CH1

56.927

97.066

0.553


Multiple sequence alignment