Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PANN_RS10590 Genome accession   NZ_LT883143
Coordinates   2245579..2246214 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2240579..2251214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PANN_RS10575 (PANN_21080) - 2241285..2242529 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  PANN_RS10580 (PANN_21090) - 2242617..2243150 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PANN_RS10585 (PANN_21100) comA 2243281..2245506 (+) 2226 WP_003113988.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PANN_RS10590 (PANN_21110) exbB 2245579..2246214 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PANN_RS10595 (PANN_21120) - 2246211..2246651 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  PANN_RS10600 (PANN_21130) lpxK 2246651..2247649 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  PANN_RS10605 (PANN_21140) - 2247687..2247872 (+) 186 WP_003091157.1 Trm112 family protein -
  PANN_RS10610 (PANN_21150) kdsB 2247872..2248636 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PANN_RS10615 (PANN_21160) - 2248636..2249100 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  PANN_RS10620 (PANN_21170) murB 2249097..2250116 (+) 1020 WP_009876758.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=1146619 PANN_RS10590 WP_003091163.1 2245579..2246214(+) (exbB) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1146619 PANN_RS10590 WP_003091163.1 2245579..2246214(+) (exbB) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment