Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | CS885_RS07845 | Genome accession | NZ_LT838273 |
| Coordinates | 1591925..1592188 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177718.1 | Uniprot ID | A0AAV3IH30 |
| Organism | Helicobacter pylori isolate HE93/10_v1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1586925..1597188
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS885_RS07825 | - | 1587861..1588997 (-) | 1137 | WP_089086746.1 | VirB8/TrbF family protein | - |
| CS885_RS08665 | - | 1588990..1589130 (-) | 141 | WP_000789928.1 | hypothetical protein | - |
| CS885_RS07835 | - | 1589127..1591677 (-) | 2551 | Protein_1488 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| CS885_RS07840 | - | 1591677..1591913 (-) | 237 | WP_001168537.1 | hypothetical protein | - |
| CS885_RS07845 | comB3 | 1591925..1592188 (-) | 264 | WP_001177718.1 | hypothetical protein | Machinery gene |
| CS885_RS07850 | comB2 | 1592200..1592484 (-) | 285 | WP_000413637.1 | TrbC/VirB2 family protein | Machinery gene |
| CS885_RS07855 | - | 1592472..1592960 (-) | 489 | WP_089086747.1 | hypothetical protein | - |
| CS885_RS07860 | - | 1593024..1593182 (-) | 159 | WP_231899360.1 | hypothetical protein | - |
| CS885_RS07865 | - | 1593185..1593985 (-) | 801 | WP_089086748.1 | integrase | - |
| CS885_RS07870 | - | 1594040..1594576 (+) | 537 | Protein_1495 | DNA adenine methylase | - |
| CS885_RS07875 | - | 1594579..1595202 (+) | 624 | WP_089086749.1 | GIY-YIG nuclease family protein | - |
| CS885_RS07880 | - | 1595350..1595712 (+) | 363 | Protein_1497 | DNA cytosine methyltransferase | - |
| CS885_RS07885 | - | 1595872..1596816 (-) | 945 | WP_089086751.1 | catalase family peroxidase | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9988.86 Da Isoelectric Point: 5.7206
>NTDB_id=1146412 CS885_RS07845 WP_001177718.1 1591925..1592188(-) (comB3) [Helicobacter pylori isolate HE93/10_v1]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=1146412 CS885_RS07845 WP_001177718.1 1591925..1592188(-) (comB3) [Helicobacter pylori isolate HE93/10_v1]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |