Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQL20_RS03225 Genome accession   NZ_LS483444
Coordinates   594295..596259 (-) Length   654 a.a.
NCBI ID   WP_006596742.1    Uniprot ID   E7SCS0
Organism   Streptococcus australis strain NCTC13166     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 589295..601259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS03205 (NCTC11371_00639) - 590408..590671 (-) 264 WP_006596747.1 SemiSWEET family transporter -
  DQL20_RS03210 (NCTC11371_00640) - 590952..591209 (+) 258 WP_040803284.1 SemiSWEET family transporter -
  DQL20_RS03215 (NCTC11371_00641) - 591385..592152 (+) 768 WP_006597128.1 ABC transporter ATP-binding protein -
  DQL20_RS03220 (NCTC11371_00642) - 592145..594136 (+) 1992 WP_006596743.1 FtsX-like permease family protein -
  DQL20_RS03225 (NCTC11371_00643) amiA3 594295..596259 (-) 1965 WP_006596742.1 peptide ABC transporter substrate-binding protein Regulator
  DQL20_RS03230 (NCTC11371_00644) - 596495..596821 (+) 327 WP_006596741.1 PadR family transcriptional regulator -
  DQL20_RS03235 (NCTC11371_00645) - 596818..597618 (+) 801 WP_006596740.1 hypothetical protein -
  DQL20_RS03240 (NCTC11371_00646) - 597615..598445 (+) 831 WP_006596739.1 hypothetical protein -
  DQL20_RS03245 (NCTC11371_00647) - 598545..598781 (+) 237 WP_000141913.1 DUF2829 domain-containing protein -
  DQL20_RS03250 (NCTC11371_00648) - 598774..599472 (+) 699 WP_006596737.1 3-oxoacyl-ACP reductase -
  DQL20_RS03255 (NCTC11371_00649) - 599500..599832 (+) 333 WP_006596736.1 hypothetical protein -
  DQL20_RS03260 (NCTC11371_00650) - 600010..600579 (+) 570 WP_006596735.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72943.96 Da        Isoelectric Point: 4.6448

>NTDB_id=1141736 DQL20_RS03225 WP_006596742.1 594295..596259(-) (amiA3) [Streptococcus australis strain NCTC13166]
MKKSKLAFLAGVTVASALFLASCGSSSKSSQTNTYSYVFSTDPDSLNYLLSNRSTTSDVTTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAQDFVTSLKYVADNKSDALYLVQNSVAGLDDYVTGKNTDFSKVGV
KAVDDHTLQYTLAQPESFWNSKLTTSTMMPVNEKFLESAGKDFGSVKPSGILYNGPYYLKSFTSKSLMEFTKNENYYDKD
NVKIENIKLTYFDGSDQDYLARNFSDGNLTTARLFPTSSTYSTIEKKFKDNIVYSPQDATVYYVYFNVNRQNYGHTEKTT
DDQKNQTKTALQNKNFRQAINFALDRTSLSAQSNGKDGASKTLRTLLVPPTFVQVDNKDFGSVVEEKLAATGDDWKDVSL
ADAQDSMFNADKAKAQFAKAKEELQAQGVQFPIHIDYVVDQSSASIVQQADSMKDSIEKTLGKENVVVDVQKLSTEDADN
ATYFAQTPDQKDFDMDIAGWGPDFQDPSTYLDIFNPVDGSALAGMGINPATDQALIEKLGLNEYKQLLDDANAEQLDTKT
RYEKYAVAQAWLTDNAFALPVYSKGAVPSITKIKPFTKAFSLIGIKDGSSYYKYMELQSDVVTTADYDKAYKNWLKEKEK
SNKKAQDELEKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1141736 DQL20_RS03225 WP_006596742.1 594295..596259(-) (amiA3) [Streptococcus australis strain NCTC13166]
ATGAAAAAATCTAAACTAGCTTTCCTAGCAGGTGTCACGGTTGCTTCAGCCCTGTTCCTTGCTTCATGTGGATCATCTTC
AAAATCTTCTCAGACAAACACATACTCATACGTGTTTAGTACTGATCCAGATTCTTTGAACTACCTCCTTTCAAACCGTT
CTACAACAAGTGACGTTACAACTAACTTGGTTGATGGATTGTTTGAAAATGACCAATATGGTAATCTCGTCCCTGCACTA
GCGGAAGATTGGTCTGTTTCTAAAGACGGACTAACCTACACTTATAAACTCCGTAAAGATGCAAAATGGTATGACTCAGA
AGGGAACGAATATGCAGATGTCACTGCACAGGACTTCGTCACTTCTCTGAAATATGTAGCAGACAACAAGTCTGATGCCC
TCTACTTAGTTCAAAACTCCGTAGCTGGCCTGGATGACTATGTCACTGGTAAAAATACGGACTTCTCTAAAGTTGGAGTG
AAAGCCGTTGATGACCATACCCTCCAATACACCTTGGCTCAACCTGAGTCCTTCTGGAATTCTAAATTGACGACTTCGAC
CATGATGCCAGTCAATGAAAAATTTCTTGAGTCTGCAGGAAAAGACTTCGGTAGCGTCAAACCTTCTGGAATCCTTTACA
ACGGTCCTTACTACTTGAAATCCTTCACTTCAAAATCTTTGATGGAGTTTACTAAAAATGAGAACTACTATGATAAAGAC
AATGTGAAGATTGAAAATATCAAATTGACCTACTTCGATGGTTCTGACCAAGACTACCTAGCTCGTAACTTCTCTGATGG
CAACTTGACCACAGCGCGTCTCTTCCCAACGAGCTCAACCTATAGCACCATTGAGAAAAAATTCAAGGACAATATCGTCT
ATTCACCGCAAGATGCGACTGTCTACTATGTCTACTTCAACGTAAACCGTCAAAACTACGGTCATACCGAGAAGACAACA
GACGACCAGAAGAACCAAACAAAAACAGCTCTTCAAAACAAAAACTTCCGTCAAGCCATCAACTTTGCCCTTGATCGTAC
TTCACTAAGTGCCCAATCAAACGGGAAAGATGGCGCTAGCAAAACCCTTCGTACGCTTCTTGTACCTCCAACATTTGTGC
AAGTAGACAACAAAGACTTCGGTAGCGTTGTCGAAGAAAAACTTGCTGCAACAGGAGATGATTGGAAGGATGTCAGCCTA
GCTGATGCGCAAGATAGCATGTTCAATGCGGACAAGGCCAAAGCACAATTTGCCAAAGCCAAAGAAGAGCTCCAAGCACA
AGGTGTTCAATTCCCAATCCACATCGACTATGTGGTTGACCAGTCTTCTGCTAGCATTGTGCAACAAGCTGATTCAATGA
AAGACTCCATCGAAAAAACATTAGGAAAAGAAAATGTCGTCGTGGATGTTCAGAAATTGTCTACGGAAGATGCGGACAAC
GCAACCTACTTCGCCCAAACACCAGATCAAAAAGACTTTGATATGGATATCGCTGGATGGGGCCCTGACTTCCAAGACCC
ATCCACTTACTTGGATATCTTCAATCCAGTCGATGGTTCAGCCTTAGCAGGTATGGGAATCAATCCGGCGACTGACCAAG
CCCTAATTGAAAAACTTGGTTTGAACGAGTACAAACAACTATTGGATGATGCCAATGCTGAACAATTGGATACCAAAACT
CGTTATGAAAAATATGCTGTTGCCCAAGCTTGGTTGACAGACAATGCCTTTGCACTTCCTGTCTACTCTAAGGGTGCTGT
TCCTTCGATCACGAAGATCAAACCATTTACAAAAGCCTTCTCCTTGATCGGTATCAAAGATGGTTCTAGCTACTACAAGT
ACATGGAATTACAAAGTGATGTTGTCACAACTGCCGACTACGACAAAGCGTATAAGAATTGGTTGAAAGAAAAAGAAAAA
TCCAATAAAAAAGCGCAAGACGAACTTGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7SCS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.173

100

0.546
  amiA Streptococcus salivarius strain HSISS4

54.255

100

0.546
  amiA3 Streptococcus thermophilus LMG 18311

53.869

100

0.543

Multiple sequence alignment