Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   DQN23_RS01400 Genome accession   NZ_LS483403
Coordinates   243359..243835 (+) Length   158 a.a.
NCBI ID   WP_111712607.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 238359..248835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS01400 (NCTC13774_00283) comX/sigX 243359..243835 (+) 477 WP_111712607.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQN23_RS01405 (NCTC13774_00284) - 244028..244294 (+) 267 WP_061409270.1 ACT domain-containing protein -
  DQN23_RS01410 (NCTC13774_00285) - 244306..245643 (+) 1338 WP_020916136.1 PFL family protein -
  DQN23_RS01415 (NCTC13774_00286) - 245873..246577 (+) 705 WP_020916137.1 histidine phosphatase family protein -
  DQN23_RS01420 (NCTC13774_00287) - 246561..247337 (+) 777 WP_020916138.1 M15 family metallopeptidase -
  DQN23_RS01425 (NCTC13774_00288) - 247334..247924 (+) 591 WP_020916139.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19479.33 Da        Isoelectric Point: 8.6905

>NTDB_id=1140332 DQN23_RS01400 WP_111712607.1 243359..243835(+) (comX/sigX) [Streptococcus lutetiensis strain NCTC13774]
MDFERYFQTVKPIILKLRRYYFVKLWDYEDWIQEGRIIFFELVEEHPDLLINEGKRYSYFKTKFSNHVKDIIRHQESFKR
KFNHMPYEEIGDISHCVPQVSFFEVADYVAYQDSLARLRRTLGREDRLKLEKVIRGERFEGKKDFLKSIEPYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1140332 DQN23_RS01400 WP_111712607.1 243359..243835(+) (comX/sigX) [Streptococcus lutetiensis strain NCTC13774]
GTGGATTTTGAACGCTATTTTCAAACGGTTAAACCAATTATTTTAAAATTACGCCGTTATTATTTTGTCAAACTCTGGGA
TTATGAGGATTGGATTCAAGAGGGACGTATTATTTTCTTTGAACTTGTAGAGGAACATCCTGATCTCTTAATTAATGAAG
GCAAACGTTATAGCTACTTTAAAACAAAATTTTCTAACCATGTTAAAGATATTATCCGCCATCAGGAATCCTTTAAACGA
AAATTTAATCATATGCCTTATGAAGAAATTGGTGATATTAGTCACTGTGTACCCCAGGTATCTTTCTTTGAAGTCGCAGA
TTACGTGGCTTATCAGGATAGCTTAGCACGTTTACGAAGAACATTGGGAAGAGAAGATAGACTGAAGTTGGAAAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGACTTCTTAAAAAGCATTGAACCGTATTTCTCAGATTTTAGACCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.